BAC Information

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BAC

Clone NameMSMg01-527A03
Chromosome5 (Build37)
Map Location 136,693,418 - 136,850,640
singlet/doubletdoublet
Overlap geneSh2b2, Cutl1
Upstream geneBaz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718
Downstream geneMylc2pl, Emid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527A03.T7 (MSMg01no527_a03.b1)MSMg01-527A03.TJ (MSMg01no527_a03.g1)
ACCAG596462AG596463
length733743
length of high quality
(start - end)		681 (53 - 733)659 (85 - 743)
definitionCHROMAT_FILE: MSMg01no527_a03.b1 PHD_FILE: MSMg01no527_a03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:06 2005CHROMAT_FILE: MSMg01no527_a03.g1 PHD_FILE: MSMg01no527_a03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,693,418 - 136,694,091)(136,849,996 - 136,850,640)
sequence
GGTGGGAGTGAGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTGTTTTCCAACCCAGTCCCTCCTGGAAGGCCTTCATT
GACTTGCCCGAGGACACCCTTACTGTCCTAACCAGGACACAACATCTCAG
CAACCCCACACCCTCACTCTACATACAAACCATTTATCATGGCTACTGTG
AGTGTCTCATCTCCCCTCCCTGCCCTTCATTTTTGAGACAGGGCCTCACG
TAGCTCAAGCTGGCCTTTGATTTGCCATTTAGCTGAGAATGGCCAGGAAC
TCCTGATCCTCCTTTGAAGTGCTGGAATTCTGGGCACGCACTACCGCATC
CTGTTTATGGGGTCCTGGGGATGGACCCAGGAAGTCCTAAAAGCTACTTA
CAAGCTCTTTACCAATTGAGCCACATCTCTGACTCTGGTTTCATTCCTCA
AATTATCTCTCTTTTCCAGTTCCCTTCAGTCTGCCCCTCCATCCATGCCC
CGCCCACAGCTGACTCCCTGAGTCCGGCTCTTCATCCCACCTGCCTCCCG
TAAGATCTGGCTTAGCAAGCCTGTGGCTGTGTGGCAGTTCCGGATCACAG
GGAGACCACTTCCTTCCCAGTGGTGACAGCGCAGTAGAATGACCACAGGA
GAGCAGGGGGTAGTCCCTAAAACAGGCTCTTTAATAATGTTTGTCTTCAC
TGAAGAGCTTGGCTTTTCCCCCCAGCATTGGGC

NAAAACCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCTGTCTCCACTGC
ACTACTGGGATTACCAATGCCCACACTTGGCTGCTTATGTGGGTGCTGGG
GACTCAGAACCATCTCCCAGCCCCAAAATCATTTTCTTTGTCCACAGGCC
TCCCAAGACTTGTCCAGATGTTCTTTTGCTCTCTGTATTCTAATGGGGAA
CTTGGTGCCTTTCCTAGCTGGCTGGCCACAGGCCTGCTATGGGGGTGATA
CTGTGCTTTTATAGGTGCCCCTACTTCTTAGAACTAGCAGCTAGCTTCAT
GCCTCTGATTGTTCTTAGCACCCAACATTAGTAAAGGACCATCATGCTAC
AGATAGAGTTGGGGATAGACCTTCCACAGACTTCAACAAGCACAAAGCGC
TGATGCACACGGCTCTGGATTTAATACACAACAGCACATGATCTAAATGT
GGTGTTACCTCTAGTCCTAGCACCTGAGAAATGAAGGCAGGCGGATCAGA
AATTCAAGGCCAGCATGGTTTACATGAGCCTCTGCCTCAAAAAGTAAAGT
AAAATAAAGAAAAGACAAGGGCATGGACTTACAGAGCCCTAGGGCACTTT
CCTTTCTCCAAGAGTTTCCATGTATATATAGAATGGTGATCACCTGGAGT
CAGCAGGCTTAGTTCAGCTTTCTACCAGTCAACCAGGTAAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_a03.b1 MSMg01no527_a03.b1 CHROMAT_FILE:
MSMg01no527_a03.b1 PHD_FILE: MSMg01no527_a03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:06 2005
         (681 letters)



>mm_chr5_136693211_136694291
          Length = 1081

 Score = 1147 bits (593), Expect = 0.0
 Identities = 650/675 (96%), Gaps = 13/675 (1%)
 Strand = Plus / Plus

                                                                       
Query: 19  caacccagtccctcctggaaggccttcattgacttgcccgaggacacccttactgtccta 78
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 caacccagtccctcctggaaggccttcattgacttgcccgaggacacccttactgtccta 267

                                                                       
Query: 79  accaggacacaacatctcagcaaccccacaccctcactctacatacaaaccatttatcat 138
           |||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 268 accaggacgcaacatctcagcaaccccacgccctcactcgacatacaaaccatttatcat 327

                                                                       
Query: 139 ggctactgtgagtgtctcatctcccctccctgcccttca-tttttgagacagg-gcctca 196
           ||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||
Sbjct: 328 ggctactgtgagtgtctcatctcccctccctgcccttcattttttgagac-ggtgcctca 386

                                                                       
Query: 197 cgtagctcaagctggcctttgatttgccatttagctgagaatggccaggaactcctgatc 256
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cgtagctcaagctggccttagatttgccatttagctgagaatggccaggaactcctgatc 446

                                                                       
Query: 257 ct----------cctttgaagtgctggaattctgggcacgcactaccgcatcctgtttat 306
           ||          |||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 447 ctcctacttccacctttgaagtgctggaattccgggcacgcactaccacatcctgtttat 506

                                                                       
Query: 307 ggggtcctggggatggacccaggaagtcctaaaagctacttacaagctctttaccaattg 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 507 ggggtcctggggatggacccaggaagtcctaaaagctacttacaagctctttaccaaatg 566

                                                                       
Query: 367 agccacatctctgactctggtttcattcctcaaattatctctcttttccagttcccttca 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 agccacatctctgactctggtttcattcctcaaattatctctcttttccagttcccttca 626

                                                                       
Query: 427 gtctgcccctccatccatgccccgcccacagctgactccctgagtccggctcttcatccc 486
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 627 gtctgcccctccatccatgccccgcccacagctgactccctgagtcgggctcttcatccc 686

                                                                       
Query: 487 acctgcctcccgtaagatctggcttagcaagcctgtggctgtgtggcagttccggatcac 546
           |||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 687 acctgcctcctgtaagatctggcttagcaagcctgtggcagtgtggcagttccagatcac 746

                                                                       
Query: 547 agggagaccacttccttcccagtggtgacagcgcagtagaatgaccacaggagagcaggg 606
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 747 agggagaccacttccttcccagtggtgacagcacagtagaatgaccacaggagagcaggg 806

                                                                       
Query: 607 ggtagtccctaaaacaggctctttaataatgtttgtcttcactgaagagcttggcttttc 666
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 ggtagtccctaaaacaggctctttaataatgtttgtcttcactgaagagcttggcttttc 866

                          
Query: 667 cccccagcattgggc 681
           |||||||||||||||
Sbjct: 867 cccccagcattgggc 881


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no527_a03.g1 MSMg01no527_a03.g1 CHROMAT_FILE:
MSMg01no527_a03.g1 PHD_FILE: MSMg01no527_a03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:06 2005
         (659 letters)



>mm_chr5_136849996_136851055
          Length = 1060

 Score = 1232 bits (637), Expect = 0.0
 Identities = 643/645 (99%), Gaps = 1/645 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacctgtctccactgcactactgggattaccaatgcccacacttggctgcttatgtgggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 cacctgtctccactgcactactgggattaccaatgcccacacttggctgcttatgtgggt 586

                                                                       
Query: 61  gctggggactcagaaccatctcccagccccaaaatcattttctttgtccac-aggcctcc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 585 gctggggactcagaaccatctcccagccccaaaatcattttctttgtccacaaggcctcc 526

                                                                       
Query: 120 caagacttgtccagatgttcttttgctctctgtattctaatggggaacttggtgcctttc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 caagacttgtccagatgttcttttgctctctgtattctaatggggaacttggtgcctttc 466

                                                                       
Query: 180 ctagctggctggccacaggcctgctatgggggtgatactgtgcttttataggtgccccta 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ctagctggctggccacaggcctgctatgggggtgatactgtgcttttataggtgccccta 406

                                                                       
Query: 240 cttcttagaactagcagctagcttcatgcctctgattgttcttagcacccaacattagta 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 405 cttcttagaactagcagctagcttcatgcctctgattgttcttagcacccagcattagta 346

                                                                       
Query: 300 aaggaccatcatgctacagatagagttggggatagaccttccacagacttcaacaagcac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aaggaccatcatgctacagatagagttggggatagaccttccacagacttcaacaagcac 286

                                                                       
Query: 360 aaagcgctgatgcacacggctctggatttaatacacaacagcacatgatctaaatgtggt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aaagcgctgatgcacacggctctggatttaatacacaacagcacatgatctaaatgtggt 226

                                                                       
Query: 420 gttacctctagtcctagcacctgagaaatgaaggcaggcggatcagaaattcaaggccag 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 gttacctctagtcctagcacctgagaaatgaaggcaggcggatcagaaattcaaggccag 166

                                                                       
Query: 480 catggtttacatgagcctctgcctcaaaaagtaaagtaaaataaagaaaagacaagggca 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 catggtttacatgagcctctgcctcaaaaagtaaagtaaaataaagaaaagacaagggca 106

                                                                       
Query: 540 tggacttacagagccctagggcactttcctttctccaagagtttccatgtatatatagaa 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 tggacttacagagccctagggcactttcctttctccaagagtttccatgtatatatagaa 46

                                                        
Query: 600 tggtgatcacctggagtcagcaggcttagttcagctttctaccag 644
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45  tggtgatcacctggagtcagcaggcttagttcagctttctaccag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1060
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1050
Effective search space:   681450
Effective search space used:   681450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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