BAC Information

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BAC

Clone NameMSMg01-527F09
Chromosome5 (Build37)
Map Location 99,454,702 - 99,615,010
singlet/doubletdoublet
Overlap genePrkg2
Upstream geneAntxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5, 1700007G11Rik, Bmp3, LOC100041680
Downstream geneRasgef1b, A930011G23Rik, LOC100040738, LOC666364, LOC100040763, LOC100040774, Hnrpd, 4930524J08Rik, Hnrpdl, Enoph1, BC062109
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527F09.T7 (MSMg01no527_f09.b1)MSMg01-527F09.TJ (MSMg01no527_f09.g1)
ACCAG596714AG596715
length764763
length of high quality
(start - end)		607 (54 - 660)639 (84 - 722)
definitionCHROMAT_FILE: MSMg01no527_f09.b1 PHD_FILE: MSMg01no527_f09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:32 2005CHROMAT_FILE: MSMg01no527_f09.g1 PHD_FILE: MSMg01no527_f09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,614,483 - 99,615,010)(99,454,702 - 99,454,986)
sequence
TTTTTTTCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTCTTACTTCCTTAGAAAAAGTCACTAGTCCGAGCA
AATGACAAAAACTGATGAAAATGGAAAGACGGGGGAAAAACTCTGGAAAT
CTAGTGATAATAGTGAACAGATCCTGTCCAGAGGTGACAGGGACAAGAAA
AGGAGGTGATCACCTCCGCAAGTCACCCCATGTGCTAGGCAAATTTAGTT
TTGCACATGCTACTTGGTTACATTGGATTGCACCTTGAATCTGTTTTTTA
TTGTGACTCAATTTTGTTATCTGTGATAGGCACATTATTGAGAAGGTGTC
TATTTTATGTTTCTTTAAGAAATAGAGATGTGGGCTGGATACATTGGCTT
AGTGGTTAAGAGCACTGATTGCTCTTCCAGAGGTCCTGAGTCCAGTTCCC
GGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTC
TTCTTGTCTGTCTGAAGACAGCTACAGGGTACTCGTATATAAAATAAATC
CTCACCTTGGTTAAGTCAGAATTTCTTCATTAAACATAGTCCTTCTGAAG
ACTATACGGTATAGGTATTAAACTAGACCTTATGAGGCTTGTTGTGGTTT
GAATGTTTAGCCCAAGGAGTGTCACTATTAGAAGGTTTGGCCTTATTGGA
GGAAGTGTCTCTGTGGGTGTGGGCTTTAAGACCTCATCCTGGCTGCCTGG
AGTCAGTCTTCTCT

NNNNNGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGTAGACGTGGCAGC
CTGCCTGTATTCCCTGTGCCCAGGATACAGAGACAGGAGACAACTGGAGC
AAGTTGTTTAGGGAGACTCTCCAAATTGGTGAGCTCCTGGTTTGGGTGAG
AGATCACACTTCAAAAAGTAGAAAGAAATTTACACCTAACCTGAAATTTC
AGCTTGCTTTGGCACAGACATGTATGTGAATGCATGCAAGCGTGTGTGCA
CATTCACATGAATACGCATACACACATATGAACACATGAACATGCACACA
CACGTATGAACACATGAACATGCATACACATGTATGAACACATGAACATG
CATACACACGTATGAACACATGAACATGCATACACACGTATGAACACATG
AACATGCATACACACATATGAACACATGAACATGCATACACACTTATGAA
CACATGAACATGCATACACACTTATGAACACATGAACATGCATACACACT
TATGAACACATGAACATGCATACACACTTATAAACAACACATACTTTGCA
AAAGAGATGGGGATATCTCCTCACAGGAGGGCTGGGGAGATAAATTTAGA
AAGTGCTGAACATGCAGGCATGAAGACCCGAGTTCTATGCACAGTCATAG
AACTTCTAATCCCCATGCTGGCATGGTAGAGACAGTAAGATTCCTGGGGG
TGGGGTGGCCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_f09.b1 MSMg01no527_f09.b1 CHROMAT_FILE:
MSMg01no527_f09.b1 PHD_FILE: MSMg01no527_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:32 2005
         (607 letters)



>mm_chr5_99614483_99615489
          Length = 1007

 Score =  975 bits (504), Expect = 0.0
 Identities = 522/528 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttcttacttccttagaaaaagtcactagtccgagcaaatgacaaaaactgatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gaattctttcttacttccttagaaaaagtcactagtccgagcaaatgacaaaaactgatg 469

                                                                       
Query: 65  aaaatggaaagacgggggaaaaactctggaaatctagtgataatagtgaacagatcctgt 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 468 aaaatggaaagacgggggaaaaactctggaaatctagtgataatagtgaacagagcctgt 409

                                                                       
Query: 125 ccagaggtgacagggacaagaaaaggaggtgatcacctccgcaagtcaccccatgtgcta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ccagaggtgacagggacaagaaaaggaggtgatcacctccgcaagtcaccccatgtgcta 349

                                                                       
Query: 185 ggcaaatttagttttgcacatgctacttggttacattggattgcaccttgaatctgtttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 348 ggcaaatttagttttgcacatgctacttggttacattggattgcaccttgaatctgtctt 289

                                                                       
Query: 245 ttattgtgactcaattttgttatctgtgataggcacattattgagaaggtgtctatttta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ttattgtgactcaattttgttatctgtgataggcacattattgagaaggtgtctatttta 229

                                                                       
Query: 305 tgtttctttaagaaatagagatgtgggctggatacattggcttagtggttaagagcactg 364
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 228 tgtttctttaagaaatagagatgtgggctggatacattggcttagtggttcagagcactg 169

                                                                       
Query: 365 attgctcttccagaggtcctgagtccagttcccggcaaccacatggtggctcacaaccat 424
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 168 attgctcttccagaggtcctgagtccaattcccggcaaccacatggtggctcacaaccat 109

                                                                       
Query: 425 ctgtaatgggatctgatgccctcttcttgtctgtctgaagacagctacagggtactcgta 484
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 108 ctgtaatgggatctgatgccctcttcttgtctgtctgaagacagctatagggtactcata 49

                                                           
Query: 485 tataaaataaatcctcaccttggttaagtcagaatttcttcattaaac 532
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48  tataaaataaatcctcaccttggttaagtcagaatttcttcattaaac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no527_f09.g1 MSMg01no527_f09.g1 CHROMAT_FILE:
MSMg01no527_f09.g1 PHD_FILE: MSMg01no527_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:32 2005
         (639 letters)



>mm_chr5_99454148_99455186
          Length = 1039

 Score =  528 bits (273), Expect = e-154
 Identities = 282/285 (98%)
 Strand = Plus / Plus

                                                                       
Query: 355 gtatgaacacatgaacatgcatacacacatatgaacacatgaacatgcatacacacttat 414
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 555 gtatgaacacatgaacatgcatacacacgtatgaacacatgaacatgcatacacacttat 614

                                                                       
Query: 415 gaacacatgaacatgcatacacacttatgaacacatgaacatgcatacacacttatgaac 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gaacacatgaacatgcatacacacttatgaacacatgaacatgcatacacacttatgaac 674

                                                                       
Query: 475 acatgaacatgcatacacacttataaacaacacatactttgcaaaagagatggggatatc 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 acatgaacatgcatacacacttataaacaacacatactttgcaaaagagatggggatatc 734

                                                                       
Query: 535 tcctcacaggagggctggggagataaatttagaaagtgctgaacatgcaggcatgaagac 594
           |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 735 tcctcacatgagggctggggagataagtttagaaagtgctgaacatgcaggcatgaagac 794

                                                        
Query: 595 ccgagttctatgcacagtcatagaacttctaatccccatgctggc 639
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ccgagttctatgcacagtcatagaacttctaatccccatgctggc 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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