Query= MSMg01no527_j20.b1 MSMg01no527_j20.b1 CHROMAT_FILE:
MSMg01no527_j20.b1 PHD_FILE: MSMg01no527_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:55 2005
(584 letters)
>mm_chr5_46817184_46818167
Length = 984
Score = 1093 bits (565), Expect = 0.0
Identities = 577/581 (99%), Gaps = 1/581 (0%)
Strand = Plus / Plus
Query: 5 gaattc-ataatcaaatactaaccagttcagtgtctgagaggaacttagtcttttcccca 63
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctataatcaaatactaaccagttcagtgtctgagaggaacttagtcttttcccca 263
Query: 64 aatgactcctgattgctgcagcctccagaaaggacaaacacagtaccttcagacgcaaac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatgactcctgattgctgcagcctccagaaaggacaaacacagtaccttcagacgcaaac 323
Query: 124 aggtcagcattggaaaagttgcaacctctatctctctaaacatcatactgatcaactcaa 183
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aggtcagcattggaatagttgcaacctctatctctctaaacatcatactgatcaactcaa 383
Query: 184 gagagcagagatatcagatccccaaaggtcttccctcttaataccaccacaaatgagagt 243
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gagagcagagatatcagttccccaaaggtcttccctcttaataccaccacaaatgagagt 443
Query: 244 tgcatttccacttgctttggagggacattcagaccatagtcccaatgtataagttcagag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgcatttccacttgctttggagggacattcagaccatagtcccaatgtataagttcagag 503
Query: 304 gaagaataagtcactcaaatgtgaaaaggagatctatatgtgaaaaacaattagcagcca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaagaataagtcactcaaatgtgaaaaggagatctatatgtgaaaaacaattagcagcca 563
Query: 364 atacccatgatcagtttacccttcaatatatcattactgagcttacacggtgtaagataa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atacccatgatcagtttacccttcaatatatcattactgagcttacacggtgtaagataa 623
Query: 424 acctgctatggagtctggagttgattgaaaatgatgctctctgaagttaatgcttttaat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acctgctatggagtctggagttgattgaaaatgatgctctctgaagttaatgcttttaat 683
Query: 484 ttctaaagcattggtgcattagcatctgagacactcttaagtttaaccagccaactccaa 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 684 ttctaaagcattggtgcattagcatctgagacactcttaagtttaaccagccaactacaa 743
Query: 544 atctggcatttaattgcatttgtggtaaatgttaaagagca 584
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atctggcatttaattgcatttgtggtaaatgttaaagagca 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no527_j20.g1 MSMg01no527_j20.g1 CHROMAT_FILE:
MSMg01no527_j20.g1 PHD_FILE: MSMg01no527_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:55 2005
(514 letters)
>mm_chr5_46980265_46981178
Length = 914
Score = 986 bits (510), Expect = 0.0
Identities = 513/514 (99%)
Strand = Plus / Minus
Query: 1 aaggaaaccttggaaactgagcaaataggatcttctttgtgagtcctaaccttttgctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 714 aaggaaaccttggaaactgagcaaataggatcttctttgtgagtcctaacctttttctaa 655
Query: 61 ctcacattactctgaatgacccaaacctagcacaaggtcagcctcaaacatctaagtcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ctcacattactctgaatgacccaaacctagcacaaggtcagcctcaaacatctaagtcaa 595
Query: 121 agacatattccctgcagtagacagtgtgattgggggtcagctcaggagcctaggataagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 agacatattccctgcagtagacagtgtgattgggggtcagctcaggagcctaggataagc 535
Query: 181 tggtgattgactgcccttcaatcctgctcagtggcacaaagaacacttcttttaggaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tggtgattgactgcccttcaatcctgctcagtggcacaaagaacacttcttttaggaatg 475
Query: 241 gggaaggcatgacagcccacctgagctgcatgctgcccctcagctgaggtattcactttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gggaaggcatgacagcccacctgagctgcatgctgcccctcagctgaggtattcactttg 415
Query: 301 taggagccatggtatcttaaacatcacaagcatccttactagataggactaacaacatgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 taggagccatggtatcttaaacatcacaagcatccttactagataggactaacaacatgg 355
Query: 361 gggtatgaaagctatttcccaatgctttggatgagtagactgcagtattgaattaatgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gggtatgaaagctatttcccaatgctttggatgagtagactgcagtattgaattaatgag 295
Query: 421 aataagtatgcaattgtatactcacatatacaagtgtgcagagtctagcttgcaatgctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aataagtatgcaattgtatactcacatatacaagtgtgcagagtctagcttgcaatgctg 235
Query: 481 acctctatggcttaggcactatgcaaatgctccc 514
||||||||||||||||||||||||||||||||||
Sbjct: 234 acctctatggcttaggcactatgcaaatgctccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
