Query= MSMg01no527_l21.b1 MSMg01no527_l21.b1 CHROMAT_FILE:
MSMg01no527_l21.b1 PHD_FILE: MSMg01no527_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:06 2005
(611 letters)
>mm_chr5_116575525_116576535
Length = 1011
Score = 659 bits (341), Expect = 0.0
Identities = 399/431 (92%), Gaps = 23/431 (5%)
Strand = Plus / Minus
Query: 182 ttccaaaaagaaactcatatctgtcctccgactaacatagatttccacagtataaaataa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 ttccaaaaagaaactcatatctgtcctccgactaacatagatttccacagtataaaataa 952
Query: 242 acatcagggcacaagtcactaccaaacatgtaaatcaaggaacgtggccttaaaaacatt 301
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 951 acatcagggcacaagtcactaccaaacatgtaaatcaaggaccgtggcattaaaaacatt 892
Query: 302 gtatcacgtagccatcagtctgtattaagtatgtatcctaacgtcaaatgatacatttca 361
||||||||||||||||||||||||||| ||||| ||||| |
Sbjct: 891 gtatcacgtagccatcagtctgtatta----tgtattctaac-----------------a 853
Query: 362 gcgatgcaaagaaactctcagttacttttgcaccaacctaaagatgagtgtctgagtcat 421
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 gtgatgcaaagaaactctcagttacttttgcaccaacctaaagatgagtgtctgagtcat 793
Query: 422 gggggg-tcaggggaggggggcatcctggatctcacaaaggcttctgggatgtcaaggag 480
|||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 792 gggggggtcaggggaggggggaatcctggatctcacaaaggtttctgggatgtcaaggag 733
Query: 481 aggttgaaagtggcagtctagtctggctctcaaaccagactctgagagtaacactgtgtt 540
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 732 aggttgggagtggcagtctagtctggctctcaaaccagactctgagattaacactgtgtt 673
Query: 541 tacccccacagtttgtgagagaacacattattcatatgccccaggaagactacatcaact 600
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tacccc-acagtttgtgagagaacacattattcatatgccccaggaagactacatcaact 614
Query: 601 ggctacagagc 611
|||||||||||
Sbjct: 613 ggctacagagc 603
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no527_l21.g1 MSMg01no527_l21.g1 CHROMAT_FILE:
MSMg01no527_l21.g1 PHD_FILE: MSMg01no527_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:06 2005
(585 letters)
>mm_chr5_116432770_116433754
Length = 985
Score = 980 bits (507), Expect = 0.0
Identities = 552/585 (94%), Gaps = 28/585 (4%)
Strand = Plus / Plus
Query: 1 ttaggaaataaatgagtgggtgaaaggttaagatcacttcaaatgtgaccaactggcggc 60
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 ttaggaaataaatgagtaggtgaaaggttaaggtcacttcaaatgtgaccaactggcggc 260
Query: 61 cagttgctagaaccactgaccatgtaaagggtttcctttgtggtctcaaaagtccttttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagttgctagaaccactgaccatgtaaagggtttcctttgtggtctcaaaagtccttttt 320
Query: 121 gtcacacagagacaaaaaggacttttgaaagaggtgaggaaggtggtttgaggagccttg 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcacacagaaacaaaaaggacttttgaaagaggtgaggaaggtggtttgaggagccttg 380
Query: 181 gggaagcagtggcgagctgccaatcagcccctggctccctgccagccttcttaggttgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggaagcagtggcgagctgccaatcagcccctggctccctgccagccttcttaggttgta 440
Query: 241 aattttgatgacactgccttgttgctatgtttatgggccactttggtcagaatgcttaac 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattttgatgacacggccttgttgctatgtttatgggccactttggtcagaatgcttaac 500
Query: 301 tctaaaagtcttccagatgggaaagaaccatcattgtctgccaggtgttcattgtctgcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctaaaagtcttccagatgggaaagaaccatcattgtctgccaggtgttcattgtctgcc 560
Query: 361 aggtgtccactgacaggtgttcattgtcaggtgtcccccaacaggtatccactgacaggt 420
|||||||||| ||||||||||||||||||||||
Sbjct: 561 aggtgtccac----------------------------caacaggtatccactgacaggt 592
Query: 421 gttcattgtcaggtgtccaccaacaggtgtccactgacaggtgtcctggagcaggtttct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gttcattgtcaggtgtccaccaacaggtgtccactgacaggtgtcctggagcaggtttct 652
Query: 481 gctcaccgtggcttcccatgtccctgctggtgtgtatcataccctctgggtattgctgtg 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gctcaccgtggcttcccatgtccctgctggtgtgtatcataccctctgggtattgctgta 712
Query: 541 cgcatttgtgtcacatcacatcactgactactcacaactttctga 585
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 cgcatttgtgtcacatcacatcactgactactcacaactttctga 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
