GGTAGTGTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCATAATTATCACTCACATGATCTTAATTATTCAGATG
ATCCTTGTTCATTTCTTAATGAAATGAAAAGCAGGCTAGAGCTAATCAAT
TATAGTTTTAACTCAAGAAGTATGTTTCATATAAGCTCTTTCCATAGATA
AGCCATGAGAGACCAATGATCATATTATTTTATTATTTCAATGTATGAGA
ACACACACATACACAACCACACACACACACACACACACACACACACACAC
ACACACACACACTATCATGAATGCAGATGTTAAGCACCAACCCAGGAGAA
AATTCAAGAACAGAAACACTAAGTACTTCTGCTGTGTGTGATAGACTCCC
TCAGAGGTAGTCTAAAGCTGCAAGGGACTGCTGTTCTCAGAGCTCACCCT
CACAATTCCTCCTTACAGGGACCAAATTTACTAGGTGGGAGAAGACAGTG
ATGTCAAATTAGATTTATCTGTTAAAAAACAAAACATTAGAGTTCATATG
GGAAAACCCGCAGAAAGAAGCTATTGATCTGTGACTGAAAGATGAAAAAT
GATAACAAAGAAATGGCTCCATCAATTTGCAGATCTGAAGAATATGTCCC
TTGGGGTTCTTCACAGACAGCATCAGTGGTGGGGAAAACTCATGCTTGGG
TTCTGGAAAGAAGGAGATCACGACGGGGGAGGAGAAAGACCATCTCCAGN

TTTTTGCTCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCCACTTGTGCTCAGTT
CAGTTTGGAGCAGTTCAGTGCGGTGCAGTTCAGTTGGGTGCAGTTGTGCT
TAGTTCAGAGCAGAGCAGTCATTCCAAGCAAAGTATTTCAGTCAGAAGCA
GAGAGAAGCCAATTTGTATCAGTCAGGTTGAAAAGGAGTTTGAGCCAGAA
CAGCTGAGTTGAAGCAGCCAGCAAGAGTTCAGAATGAGTTAGAAAGGGTG
GGTTTATTCACCAGTATGTCCCAAATACTGAAAGATTTTATGCCTAGGTT
AGCAGATAGATGCTGGAAGATGAAACCTTCAAGGTTTGGACTTACAGAAG
ATTAGGTTGTATGGAGGCTAGAAGCTTCCAGGCCTAGGTCTAGGGATACT
TAGAAACTCTAGGCTCAGCCCAAGCTATGTATTTGCAAAGCTTGGGTATG
GCTCTCATCTCATGCATTCCTCTGAGGAAATAAAAATGATATTTTCATTT
ACTGCAAAGAACCTAGCTCACAGCCATACAAGCTCTCTGATCATTGCTTC
AGTCTCTGTCCCCTTACTAGCCATGTTTACTTGACTCTGTGGATCATTAT
TCTTCTGACAACCTGACCCCTCTGTCTTCTACAATTCTCTCTCCTCCATT
TCCTCAGGATTATCTGAGATCAGCATAACACTAAGATGTGGGTCTCTCCA
TCTGCN

Query= MSMg01no527_m23.b1 MSMg01no527_m23.b1 CHROMAT_FILE:
MSMg01no527_m23.b1 PHD_FILE: MSMg01no527_m23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:12 2005
         (568 letters)



>mm_chr5_69049838_69050805
          Length = 968

 Score =  949 bits (491), Expect = 0.0
 Identities = 501/509 (98%), Gaps = 8/509 (1%)
 Strand = Plus / Minus

                                                                       
Query: 68  gaaatgaaaagcaggctagagctaatcaattatagttttaactcaagaagtatgtttcat 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 gaaatgaaaagcaggctagagctaatcaattatagttttaactcaagaagtatgtttcat 909

                                                                       
Query: 128 ataagctctttccatagataagccatgagagaccaatgatcatattattttattatttca 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 ataagctctttccatagataagccatgagagaccaatgatcatattattttattatttca 849

                                                                       
Query: 188 atgtatgagaacacacacatacacaac--------cacacacacacacacacacacacac 239
           |||||||||||||||||||||||||||        |||||||||||||||||||||||||
Sbjct: 848 atgtatgagaacacacacatacacaaccacacacacacacacacacacacacacacacac 789

                                                                       
Query: 240 acacacacacacacacacactatcatgaatgcagatgttaagcaccaacccaggagaaaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 acacacacacacacacacactatcatgaatgcagatgttaagcaccaacccaggagaaaa 729

                                                                       
Query: 300 ttcaagaacagaaacactaagtacttctgctgtgtgtgatagactccctcagaggtagtc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ttcaagaacagaaacactaagtacttctgctgtgtgtgatagactccctcagaggtagtc 669

                                                                       
Query: 360 taaagctgcaagggactgctgttctcagagctcaccctcacaattcctccttacagggac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 taaagctgcaagggactgctgttctcagagctcaccctcacaattcctccttacagggac 609

                                                                       
Query: 420 caaatttactaggtgggagaagacagtgatgtcaaattagatttatctgttaaaaaacaa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 caaatttactaggtgggagaagacagtgatgtcaaattagatttatctgttaaaaaacaa 549

                                                                       
Query: 480 aacattagagttcatatgggaaaacccgcagaaagaagctattgatctgtgactgaaaga 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aacattagagttcatatgggaaaacccgcagaaagaagctattgatctgtgactgaaaga 489

                                        
Query: 540 tgaaaaatgataacaaagaaatggctcca 568
           |||||||||||||||||||||||||||||
Sbjct: 488 tgaaaaatgataacaaagaaatggctcca 460


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)