BAC Information

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BAC

Clone NameMSMg01-527N18
Chromosome5 (Build37)
Map Location 144,167,930 - 144,168,532
singlet/doubletsinglet
Overlap geneKdelr2
Upstream geneSlc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip
Downstream geneLOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527N18.T7 (MSMg01no527_n18.b1)MSMg01-527N18.TJ (MSMg01no527_n18.g1)
ACCAG597113AG597114
length794778
length of high quality
(start - end)		607 (46 - 652)246 (75 - 320)
definitionCHROMAT_FILE: MSMg01no527_n18.b1 PHD_FILE: MSMg01no527_n18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:16 2005CHROMAT_FILE: MSMg01no527_n18.g1 PHD_FILE: MSMg01no527_n18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTAAGGTAACGTTGAGTAACCAGGAAAAAGGAAGCAGGTTGCTAC
TTAATATTCATTGTTTCCATGGGAGATTAGAGCATTGAGGAAAACACAGT
ATTTAGCTGATGTGCCAAGAATGGAAGGTAAATGGGTGAGTTCAGTTTGT
GATTCCCAAGGATGCCCTGGATATTAGTAAGCCGCCCGCACTCACTCTTG
GACTTAAGATCTTCTTTATTCTGCTATATACAATTTTTCTGACCTTTCAA
AAATGAAATTCACCAAGGCCATTTATTTTGAGTTAAATGCTGGCTTGTGT
TAGATGCTCTGTTTTCCATGCTAAGTTTAAAAGTTCTGTAGAGGCTTTGG
AAAGAGGAAGAACTTGATCAGAGTTTCTCAAGTATCCGGAACCTGAGCCA
ACCTGAGCCGCGGTGTCCAGGCCGGCGTTTTCAGTTGGAAAAGCGGAGCT
CCTTTTAGGGTTTCAGCACCAGCTTAGAACCTAAAACACAGGGCCTTTCC
CTAAGGGGAAGACGGGGCAGGCTGCTCAGGAAGCTGGACGTTACATTTTT
GAGTACTCAGTGTTGCTCAAGCTGGAATCCTCCTGCGTCAGCCTCCTGAG
AGCTAGGTTTACATGTGTGCTTCTCCACGCAGGCTTTTAAGACCTGTTGT
GAGCTGATTGTGCTTGAATGTAAACTTGTGTTGTGTCTGGTGCACTGTAT
AGGGGACATCAATGACAGTGTCTTGTGTTACTGACCCTGCAGCC

ACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTACAATGTTGCAAATATCAGCTGAT
AGAGGGCTTTCCCAGTGCACACAGAGCCCTGTGTTTCATCCCCAACACCA
CAGTGTATGTAAGTGTGTGAGTGTGCACATGTGCGTGTGCAAGCATGTGG
AGGTCAAAGGACAATTTCTGGATATCAGACCTCTCCTTCTACTGAGTGGG
TCCCAGAGTGTGTGTGTGTATGTATGTATGTATGTGTATGTGTATATATA
TATATGTATATATATATATATATATATACATATATATATATACACACACA
CACTCTGTGACTCACTCTCTGTAGAGAGAGAGGAGAGATATAGAGAGAGT
TTTTTTTTATACACACACACACGCACACGCGTGTGTGCACACACACACAC
ATACATAGAGTGTGGTTTTATAAAAAACACATATGTGTGTGTGTGGAGAG
AGAGATCTCTCTCCACATATATATTTGACATAGTGTAAAGCGTGCGCGTA
TCTATATAGAGTGACACATATATGTAGAGGGGGGGGCGTGCGTCGTTCTT
TCGCTTTGTTCGTGCGGGAGTAGTGCTCATATATATACACNTNCCCTTTT
TTTTATATCCTTCCTTTCACCCTCTCTCTCGTGCGCTATTTTGGCCACAT
TTTATTTTATTATTATTTCTCCCCTCTTTATTCTCTTTTTTTCCCTTCCT
TATTTCTTATGCCCCCTCTTATTAATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_n18.b1 MSMg01no527_n18.b1 CHROMAT_FILE:
MSMg01no527_n18.b1 PHD_FILE: MSMg01no527_n18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:16 2005
         (607 letters)



>mm_chr5_144167726_144168732
          Length = 1007

 Score = 1151 bits (595), Expect = 0.0
 Identities = 601/603 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttaaggtaacgttgagtaaccaggaaaaaggaagcaggttgctacttaatattc 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaagggaacgttgagtaaccaggaaaaaggaagcaggttgctacttaatattc 264

                                                                       
Query: 65  attgtttccatgggagattagagcattgaggaaaacacagtatttagctgatgtgccaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attgtttccatgggagattagagcattgaggaaaacacagtatttagctgatgtgccaag 324

                                                                       
Query: 125 aatggaaggtaaatgggtgagttcagtttgtgattcccaaggatgccctggatattagta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatggaaggtaaatgggtgagttcagtttgtgattcccaaggatgccctggatattagta 384

                                                                       
Query: 185 agccgcccgcactcactcttggacttaagatcttctttattctgctatatacaatttttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agccgcccgcactcactcttggacttaagatcttctttattctgctatatacaatttttc 444

                                                                       
Query: 245 tgacctttcaaaaatgaaattcaccaaggccatttattttgagttaaatgctggcttgtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgacctttcaaaaatgaaattcaccaaggccatttattttgagttaaatgctggcttgtg 504

                                                                       
Query: 305 ttagatgctctgttttccatgctaagtttaaaagttctgtagaggctttggaaagaggaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttagatgctctgttttccatgctaagtttaaaagttctgtagaggctttggaaagaggaa 564

                                                                       
Query: 365 gaacttgatcagagtttctcaagtatccggaacctgagccaacctgagccgcggtgtcca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaacttgatcagagtttctcaagtatccggaacctgagccaacctgagccgcggtgtcca 624

                                                                       
Query: 425 ggccggcgttttcagttggaaaagcggagctccttttagggtttcagcaccagcttagaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggccggcgttttcagttggaaaagcggagctccttttagggtttcagcaccagcttagaa 684

                                                                       
Query: 485 cctaaaacacagggcctttccctaaggggaagacggggcaggctgctcaggaagctggac 544
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cctaaaccacagggcctttccctaaggggaagacggggcaggctgctcaggaagctggac 744

                                                                       
Query: 545 gttacatttttgagtactcagtgttgctcaagctggaatcctcctgcgtcagcctcctga 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gttacatttttgagtactcagtgttgctcaagctggaatcctcctgcgtcagcctcctga 804

              
Query: 605 gag 607
           |||
Sbjct: 805 gag 807


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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