NNAACTTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGC
GGAATTCATCCTGGAAAGAGAGAAATAAAGACCACACCATCTCAGGGGAA
GGGGGAAGGGAGAGAGAGAGAGAGAGAGACAGAAAAAGACAGAGAGAGAG
AGAGAGAGAGAGGGAGAGAGGGAGAGAGCTGCTCCCCACCAGGATGGAGA
ATTGTAGTCAGGTCTGCAGGTTCCATACCTCTTGTGCTCCTCAAAAGGTC
AGGAGAATTAATTGTCCAGGTATGCAATGCATTCCCAGTAGAGAATGACA
AAGAACCTTGGCTCCTGTTCTCGAGCCTGAGACTGAATAAATCATAACAT
AAATATGAACGTGTAAGCCTTCGTCAAGTGTGTCCATTATTTGCTCTTGG
TTTGTTTTCTCTGAATTGTATTCTACCTCTTCAGGCTACCATTAGCAAGG
TTGGAGAGGGAGGTAGTTATTGACAGTTTCAACTCTAACCACTCAACTCA
TAATGAAGGATCATCAAGTATCAGGGTAGACAGGTAATAGCACATAAGCA
ACAAATCTCCTTTGTGTGCCTTTATTAATCTAAGTCTTTAAATGATCCCC
ACTCATCCACAAAAAAATGTGCAGAATGAAAACTGCCTTTATTTAATAAA
AGAAATTGGCCTTATTTTTTTAAAAAATACCAAAAGGAGAGAACTGTCTC
AAAAATCATGCACAATCCCAGGTACAGCCCAATAATCTAATTTCC

NNNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCCGAGGAATACCGAA
TGGCTGAGAAGCACCCGAAAAAATGTTCAACATCATTAATCATCAGAGAA
ATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGC
TAAGATTAAAAATTCAGATGACAGCAGATGCTGGCGAGGATGTGGAGAAA
GAGGAACACTCCTCCATTGTTGGTGGAATTGCAAGCTTCTACAACCACGC
TGTAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGA
GGATCCCGCAATACCACTCCTAGGCATATATCCAGAAGTTGTCCCAACGT
GTAAGAAGGACACATGCTCCACTATGTTCATAGCAACCTTATTTATAATA
GCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATAAA
AAAAAAAATGTGGTACATTTACACAATGGAGTACTACTCGGCTATTAAAA
AAAAATGAATTTATGAAATTCCTAGGCAAATGGTTGGACTTGGAGGGCAT
CATCCTGAGTGAGTTAACACAATCACAAAAGAACTCAAATGTTATGTACT
CACTGATAAGTGGATATTAGCCCAGAAACTTAGTATAGCGAGATATATGT
ACAATTTGTAAAACACATGAAACTGAAGAAGAACGAAGACCAAAGTGTGG
ACACN

Query= MSMg01no528_c17.b1 MSMg01no528_c17.b1 CHROMAT_FILE:
MSMg01no528_c17.b1 PHD_FILE: MSMg01no528_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:42 2005
         (700 letters)



>mm_chr5_48404137_48405235
          Length = 1099

 Score = 1172 bits (606), Expect = 0.0
 Identities = 687/740 (92%), Gaps = 47/740 (6%)
 Strand = Plus / Minus

                                                                        
Query: 6    ggaattc-atcctggaaagagag-aaataaagaccacaccatctcaggggaagggggaag 63
            ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1071 ggaattcaatcctggaaagagagaaaataaagaccacaccatctcaggggaagggggaag 1012

                                                                        
Query: 64   g--------------gagagagagagagagagagacagaaaaagacagagagagagagag 109
            |              |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 ggagagagagagagagagagagagagagagagagacagaaaaagacagagagagagagag 952

                                                                        
Query: 110  agagagag---------------------------g-gagagagggagagagctgctccc 141
            ||||||||                           | |||||||||||||||||||||||
Sbjct: 951  agagagagagagagagagagagagagagagagagagagagagagggagagagctgctccc 892

                                                                        
Query: 142  caccaggatggagaattgtagtcaggtctgcaggttccatacctcttgtgctcctcaaaa 201
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891  caccaggatggagaattgtagtcaggtctgcaggttccatacctcttgtgctcctcaaaa 832

                                                                        
Query: 202  ggtcaggagaattaattgtccaggtatgcaatgcattcccagtagagaatgacaaagaac 261
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831  ggtcaggagaattaattgtccaggtatgcaatgcattcccagtagagaatgacaaagaac 772

                                                                        
Query: 262  cttggctcctgttctcgagcctgagactgaataaatcataacataaatatgaacgtgtaa 321
            ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 771  cttggctcctgttctcgagcctgagactgaatagatcataacataaatattaacgtgtaa 712

                                                                        
Query: 322  gccttcgtcaagtgtgtccattatttgctcttggtttgttttctctgaattgtattctac 381
            ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 711  gccttcgtcaagtgtgtgcattattcgctcttggtttgttttctctgaattgtattctac 652

                                                                        
Query: 382  ctcttcaggctaccattagcaaggttggagagggaggtagttattgacagtttcaactct 441
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651  ctcttcaggctaccattagcaaggttggagagggaggtagttattgacagtttcaactct 592

                                                                        
Query: 442  aaccactcaactcataatgaaggatcatcaagtatcagggtagacaggtaatagcacata 501
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591  aaccactcaactcataatgaaggatcatcaagtatcagggtagacaggtaatagcacata 532

                                                                        
Query: 502  agcaacaaatctcctttgtgtgcctttattaatctaagtctttaaatgatccccactcat 561
            ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 531  agcaacaaatctcctttgtgtacctttat-aatctaagtctttaaatgatccccactcat 473

                                                                        
Query: 562  ccacaaaaaaatgtgcagaatgaaaactgcctttatttaataaaagaaattggccttatt 621
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472  ccacaaaaaaatgtgcagaatgaaaactgcctttatttaataaaagaaattggccttatt 413

                                                                        
Query: 622  tttttaaaaaataccaaaaggagagaactgtctcaaaaatcatgcacaatcccag-gtac 680
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 412  tttt-aaaaaataccaaaaggagagaactgtctcaaaaatcatgcacaatcccagtgtac 354

                                
Query: 681  agcccaataatctaatttcc 700
            |||||||||||| |||||||
Sbjct: 353  agcccaataatcgaatttcc 334


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1099
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1089
Effective search space:   751410
Effective search space used:   751410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)