Query= MSMg01no528_d16.b1 MSMg01no528_d16.b1 CHROMAT_FILE:
MSMg01no528_d16.b1 PHD_FILE: MSMg01no528_d16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:46 2005
(684 letters)
>mm_chr5_84573130_84574212
Length = 1083
Score = 1060 bits (548), Expect = 0.0
Identities = 645/682 (94%), Gaps = 12/682 (1%)
Strand = Plus / Plus
Query: 6 gaattcaatgaatatattatttatatatctgcaataagataaataatttctgcatttgga 65
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcaatgagtatattatttacatatctgcaataagataaataatttctgcatttgga 265
Query: 66 acacgtatatcagaatttgaaccatgtcttcctgttgcttgggtaaccaaaataggtaat 125
|| | ||||||||| |||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 266 actcttatatcagactttgaaccatgtcttcctattgcttggataaccaaaataggtaat 325
Query: 126 ttcttttctgctatttccagagtactttgttattgtgcacatgttctcaccactaacttt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttcttttctgctatttccagagtactttgttattgtgcacatgttctcaccactaacttt 385
Query: 186 tgtgcttgaatttgatgaattaaatgttctcttcctcctccctctttttcttttttttct 245
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 386 tgtgcttgaatttgatgaattaaatgttctcttcctcctccctcttttt-atttttttct 444
Query: 246 ctgctaccctgtcctttttactatcttcttcacttgccccctaatagataaagctctgtt 305
||| || |||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct: 445 ctgttaacctgtcctttttactatcttcttcacttgcccactgatagaaaaagctctgtt 504
Query: 306 tatagcatcagttaacaattgtcaattattaacaattatcaattataaggtcaatatttt 365
|||| ||||||||||||||| ||||||||||| |||||||||||||||| ||||
Sbjct: 505 tataacatcagttaacaattatcaattattaa-------caattataaggtcaat-tttt 556
Query: 366 tgtttccaataatc--atctttcca-aagattaaatccatttttaatcaataaatatttc 422
|||||||||||||| ||||||||| |||||||||||||||||| ||| ||||||||||
Sbjct: 557 tgtttccaataatcatatctttccacaagattaaatccatttttgttcagtaaatatttc 616
Query: 423 cttttatgtggattatattgtcacagaaaatgaacatccttaaaattggtgtgtacatag 482
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 617 cttttatgtggattatattgtcacagaaaatgaacatccttaaaattgatgtgtacatag 676
Query: 483 catttctaccctcatagtttgagaaaaggaacaaacatctcatcaatcaaaccactatgc 542
|||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 677 catttctaacctcataggttgagaaaaggcacaaaaatctcatcaatcaaaccactatgc 736
Query: 543 taaactctttccatctccctattttctactcactattacttaatattcctcaataactac 602
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 taaagtctttccatctccctattttctactcactattacttaatattcctcaataactac 796
Query: 603 ttacctatcaattaataaatatatttataaatgttgttccaattttatcatatatttata 662
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ttacctatcaattaataagtatatttataaatgttgttccaattttatcatatatttata 856
Query: 663 tccacttattttgactcaaact 684
||||||||||||||||||||||
Sbjct: 857 tccacttattttgactcaaact 878
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1083
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1073
Effective search space: 723202
Effective search space used: 723202
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_d16.g1 MSMg01no528_d16.g1 CHROMAT_FILE:
MSMg01no528_d16.g1 PHD_FILE: MSMg01no528_d16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:46 2005
(656 letters)
>mm_chr5_84710017_84711072
Length = 1056
Score = 1237 bits (640), Expect = 0.0
Identities = 652/656 (99%)
Strand = Plus / Minus
Query: 1 taaatgaggtttgtcagtcaagcgtggcaaaatctaatctcgtccaaagaaaaagaggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 taaatgaggtttgtcagtcaagcgtggcaaaatctaatctcgtccaaagaaaaagaggaa 797
Query: 61 aacggaccagaaaattatctgattttccgatttcatggccaaggttaccccgggaagtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 aacggaccagaaaattatctgattttccgatttcatggccaaggttaccccgggaagtga 737
Query: 121 tgaaagtgccatttaaagcttgtaactaaggaagtacgccaaacgtagccgtaataacga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tgaaagtgccatttaaagcttgtaactaaggaagtacgccaaacgtagccgtaataacga 677
Query: 181 ataaaccgtgtggaaagatagcgttttaacaattttacagttgctaagtgtgaaaattgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ataaaccgtgtggaaagatagcgttttaacaattttacagttgctaagtgtgaaaattgt 617
Query: 241 aatgtggtcaagctccaggaatccatggcagtcggtgcaaagaactggaacaatgctcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 aatgtggtcaagctccaggaatccatggcagtcggtgcaaagaactggaacaatgctcaa 557
Query: 301 ccaggaaacattctcagctccttaagtttaaacactgatgaagtcggtttcttccttgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ccaggaaacattctcagctccttaagtttaaacactgatgaagtcggtttcttccttgga 497
Query: 361 ggtgccgactccaggacaccacgcctgaggacagcttcattagtgaggtggtcctttcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ggtgccgactccaggacaccacgcctgaggacagcttcattagtgaggtggtcctttcct 437
Query: 421 ctgtgtggagaatgagaacaagatcgctgagaacacaggtagatgcggagtgcagccgaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ctgtgtggagaatgagaacaagatcgctgagaacacaggtagatgcggagtgcagccgaa 377
Query: 481 aaggttgttcagcttgtttgaccttaccatcatttttacgttgttctgagttgtggctga 540
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 376 aaggttgttcagcttgtttgaccttaccatcattttcacgttgttctgagttgtggctga 317
Query: 541 aggagcgaaagaaaacgacttggacttgcaaataccttacaaattctttttcatgtaatt 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 316 aggagcgaaagaaaacgacttggacttgcaaataccttccaaattctttttcatgtaatt 257
Query: 601 cactagacattagaagctgataggccattttactgtccacatggaaatatctaata 656
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 256 cactagacattagaagctaatagtccattttactgtccacatggaaatatctaata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
