BAC Information

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BAC

Clone NameMSMg01-528E21
Chromosome5 (Build37)
Map Location 51,087,283 - 51,240,170
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666223, Gpr125, EG637307, LOC100041015, LOC242987
Downstream geneEG624734, LOC666265, LOC100041059, Ppargc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528E21.T7 (MSMg01no528_e21.b1)MSMg01-528E21.TJ (MSMg01no528_e21.g1)
ACCAG597453AG597454
length755749
length of high quality
(start - end)		702 (51 - 752)617 (77 - 693)
definitionCHROMAT_FILE: MSMg01no528_e21.b1 PHD_FILE: MSMg01no528_e21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:52 2005CHROMAT_FILE: MSMg01no528_e21.g1 PHD_FILE: MSMg01no528_e21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,239,473 - 51,240,170)(51,087,283 - 51,087,899)
sequence
TTTTCTTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTGTATTTTCACAGTTAGTGAGGTCTGAGGTAATTAGGTT
GATTGTACCCTGGGCTATAGATAAAACTGTAAAGCTGCAGATTGGACAGG
CTACTGCTACCAAAGTTAGAGTCACTGTTCCTTTCACAAACGTAGAGGAG
GCCGGGTACTTTACACTATTATGTGGGACAAGGTTCACCTGTGGCATGAC
CTGGTAGAGGGCATCAGCACTTTTGAATAAGTACCAGCATGCTTTCCTCT
GCTTTCCGCAGCCCCTCTTCTTGTTCCAATGGATCAGTTTTCCTTTCTTT
GGCTCTTTAGCTTTTGTCCATTAGAGTTTCCCTGAAGACTCTTTTGTCAA
ACAAAGCAAAACACTTCAGAAAAGGCTGTGGGTTCTCTGCAGAGTTATAG
CCAGGGTTTTGTTTATGTATAGCCAACACTTACTGCGTTAGCACTCCCCA
AAGGAAAATCGAGAGAGATATCAGAAAAATGTTTTCGGTAATTGCTACTT
GGTTTGATCTCCTGGTATTTCATGGTGCTTTATGCAGCATTAATGGCATC
ACCAGAGAGTCTACGGATACAAAAGAACTTCTAAGTAAAGGCCTGTGTCA
AACGTAAGGGAGCGATTACAAACCTCAGAGAGGACTGGCTGAGTGCATAT
TTAAACACTCCTCTTAGAGTTACATGACAACACTTCTCTGCATAAGTCTT
TATCC

NNACGATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAATTAATTTAACTAATATTTGAA
GGTCTATTGTGTGAACAAAGCTCTATGTAGGCTCTATGGGTAAAGAAGAG
TTAAAAATAAAGGAGCTATGGACCAAAAGTTCTTAACTCAGGGGCTAAAG
GGATATTACTATAGCAAACCATGTTTCTGATACTCAGGATTCTCTCTGTA
GTAATAAAATGGGTAGAAAATGATTTTCATTGAGTAGTATATGAGTAATT
GGTGAGGTGACAGCATTTGAAGTGAGTATACTACCTTGAAATCATTACTT
AAATAGAATTCCAGAAAGTTATGGATATGTTTGCCTCCAAAAGGACAATT
TCTTCTTTGGCTAACATTTTGTGTGCTCTTATATAGATAGATTTCACATC
AGTAGTGTTTTAGCTTTTTCTTTTTTTATAATTAGGACTTTAATATAAAG
TAAGAATATGAACTTCATAGGTTGTTGAAAAAACTATTACATAAGAGAAA
AAGATTTGCCAAATCAAGTAGACTTTATAATCTTTCTCAAATTTTTGATA
GTATGATTTGCTTAAACTCTATCTTTGAGAAAGTCATTCCCTATATAAAA
CAAAATAAAAAGAAGATATTAAATGGCCAAGAGACTATAAAACCCAGAGG
ACCAGAAAGTCTATTGTAGGATTACAGCTCCTAGAGAAGTCAGGGAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_e21.b1 MSMg01no528_e21.b1 CHROMAT_FILE:
MSMg01no528_e21.b1 PHD_FILE: MSMg01no528_e21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:52 2005
         (702 letters)



>mm_chr5_51239269_51240370
          Length = 1102

 Score = 1280 bits (662), Expect = 0.0
 Identities = 689/698 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgtattttcacagttagtgaggtctgaggtaattaggttgattgtaccctggg 64
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 gaattcctgtaaattcacagttagtgaggtctgaggtaattaggttgattgtaccctggg 843

                                                                       
Query: 65  ctatagataaaactgtaaagctgcagattggacaggctactgctaccaaagttagagtca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 ctatagataaaactgtaaagctgcagattggacaggctactgctaccaaagttagagtca 783

                                                                       
Query: 125 ctgttcctttcacaaacgtagaggaggccgggtactttacactattatgtgggacaaggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 ctgttcctttcacaaacgtagaggaggccgggtactttacactattatgtgggacaaggt 723

                                                                       
Query: 185 tcacctgtggcatgacctggtagagggcatcagcacttttgaataagtaccagcatgctt 244
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 722 tcacctgtggcatgacctggtagagggcatcagcacttttgagtaagtaccagcatgctt 663

                                                                       
Query: 245 tcctctgctttccgcagcccctcttcttgttccaatggatcagttttcctttctttggct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tcctctgctttccgcagcccctcttcttgttccaatggatcagttttcctttctttggct 603

                                                                       
Query: 305 ctttagcttttgtccattagagtttccctgaagactcttttgtcaaacaaagcaaaacac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ctttagcttttgtccattagagtttccctgaagactcttttgtcaaacaaagcaaaacac 543

                                                                       
Query: 365 ttcagaaaaggctgtgggttctctgcagagttatagccagggttttgtttatgtatagcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ttcagaaaaggctgtgggttctctgcagagttatagccagggttttgtttatgtatagcc 483

                                                                       
Query: 425 aacacttactgcgttagcactccccaaaggaaaatcgagagagatatcagaaaaatgttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aacacttactgcgttagcactccccaaaggaaaatcgagagagatatcagaaaaatgttt 423

                                                                       
Query: 485 tcggtaattgctacttggtttgatctcctggtatttcatggtgctttatgcagcattaat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tcggtaattgctacttggtttgatctcctggtatttcatggtgctttatgcagcattaat 363

                                                                       
Query: 545 ggcatcaccagagagtctacggatacaaaagaacttctaagtaaaggcctgtgtcaaacg 604
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ggcatcaccagagagtctatggatacaaaagaacttctaagtaaaggcctgtgtcaaacg 303

                                                                       
Query: 605 taagggagcgattacaaacctcagagaggactggctgagtgcatatttaaacactcctct 664
           |||||||| |||| |||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 302 taagggagtgattgcaaatctcagaggggactggctgagtgcatatttaaacactcctct 243

                                                 
Query: 665 tagagttacatgacaacacttctctgcataagtcttta 702
           ||||||||||||||||||||||||||||||||| ||||
Sbjct: 242 tagagttacatgacaacacttctctgcataagttttta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space:   755664
Effective search space used:   755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no528_e21.g1 MSMg01no528_e21.g1 CHROMAT_FILE:
MSMg01no528_e21.g1 PHD_FILE: MSMg01no528_e21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:52 2005
         (617 letters)



>mm_chr5_51087083_51088099
          Length = 1017

 Score = 1162 bits (601), Expect = 0.0
 Identities = 613/617 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaattaatttaactaatatttgaaggtctattgtgtgaacaaagctctatgtaggctcta 60
           ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 201 aaattaatttaactaatatttgaaggtgtattgtatgaacaaagctctatgtaggctcta 260

                                                                       
Query: 61  tgggtaaagaagagttaaaaataaaggagctatggaccaaaagttcttaactcaggggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggtaaagaagagttaaaaataaaggagctatggaccaaaagttcttaactcaggggct 320

                                                                       
Query: 121 aaagggatattactatagcaaaccatgtttctgatactcaggattctctctgtagtaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagggatattactatagcaaaccatgtttctgatactcaggattctctctgtagtaata 380

                                                                       
Query: 181 aaatgggtagaaaatgattttcattgagtagtatatgagtaattggtgaggtgacagcat 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 aaatgggtagaaaatgattttcattgagtagtatatgagtaattagtgaggtgacagcat 440

                                                                       
Query: 241 ttgaagtgagtatactaccttgaaatcattacttaaatagaattccagaaagttatggat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgaagtgagtatactaccttgaaatcattacttaaatagaattccagaaagttatggat 500

                                                                       
Query: 301 atgtttgcctccaaaaggacaatttcttctttggctaacattttgtgtgctcttatatag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtttgcctccaaaaggacaatttcttctttggctaacattttgtgtgctcttatatag 560

                                                                       
Query: 361 atagatttcacatcagtagtgttttagctttttctttttttataattaggactttaatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atagatttcacatcagtagtgttttagctttttctttttttataattaggactttaatat 620

                                                                       
Query: 421 aaagtaagaatatgaacttcataggttgttgaaaaaactattacataagagaaaaagatt 480
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaagtaagagtatgaacttcataggttgttgaaaaaactattacataagagaaaaagatt 680

                                                                       
Query: 481 tgccaaatcaagtagactttataatctttctcaaatttttgatagtatgatttgcttaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgccaaatcaagtagactttataatctttctcaaatttttgatagtatgatttgcttaaa 740

                                                                       
Query: 541 ctctatctttgagaaagtcattccctatataaaacaaaataaaaagaagatattaaatgg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctctatctttgagaaagtcattccctatataaaacaaaataaaaagaagatattaaatgg 800

                            
Query: 601 ccaagagactataaaac 617
           |||||||||||||||||
Sbjct: 801 ccaagagactataaaac 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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