BAC Information

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BAC

Clone NameMSMg01-528F11
Chromosome5 (Build37)
Map Location 138,648,837 - 138,649,413
singlet/doubletsinglet
Overlap genenone
Upstream geneAche, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454
Downstream geneBC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528F11.T7 (MSMg01no528_f11.b1)MSMg01-528F11.TJ (MSMg01no528_f11.g1)
ACCAG597480AG597481
length727732
length of high quality
(start - end)		617 (70 - 686)577 (84 - 660)
definitionCHROMAT_FILE: MSMg01no528_f11.b1 PHD_FILE: MSMg01no528_f11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:54 2005CHROMAT_FILE: MSMg01no528_f11.g1 PHD_FILE: MSMg01no528_f11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAAATACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCCCTTTATTATTGTGTGATGTTCCATGTGTGTTTTAC
TCTTCAATAACATTTCTTTTATGAAGGTGGCTGCCCTTTCATATATGTTT
AGATTTGAAACTACCGCCTGATGGATTTTCCTTTGATGAATAGGAATATA
TTCATCTTCCCCATCTCATTTGATAACTTTTGGTTGAAAGTACATTTTAT
TTGATATTAGAGTGGCACCCCCAGCTTTCTTGATACCTTTTTCTTTTTTA
TTGGATATTTTCTTTATTTACATTGCAAATGTTATTCCCTTTCACTATTT
CCACCCTCCTGGAAACACCCTATAACATCCTCCCTCTCTCTGCTTCTATG
AAGGTGTTCCTCCAACTACTCATCCACTCCCACTTCCCCACCTTCAATTT
CCCTACACTGGGCATGTATTGAGCCTTTATAAGACCAAGGACTTCTCCAT
CCATTGATGCCTGACAAGGCCATCCTCTGTTACATATGCATCTGGAGCCA
GGTGTTAGTGGCTTAGTCCCCGGGAACATCTTGTGATGTCTGGATAGTTG
ATATTATTGTTCTTCCTATGGTGTTGCAAACCCCTTCAGCTCCTTCAGTC
CTTTCTCTAACTCCTCTATTTGGGACCCATCACTTAGTCCAATGGTTGGC
TGCAAGCATCTGCCTCTGCGTTTGTAA

NNNCCCCACTATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGTTGGTGGAAGGTG
GGGCATGGGGCATCTGATAAAGTGGGGTGGGGTTGGGGAGGGTCTCCTCT
GCTGCTTGACCTATGGATTCGCTGCCCCAGAACTTAGTTATTGTTTCTTT
GTTGTTTGTTTCCTCTCACAGATCAGTACAGACTGATTAATGGTCTCTTC
AATGGAAAAAGAGTGTGCACACCCAACTTCTAGTATAGGAGCAACTGCGA
CTCAGATATAAAGCACCTAAGCCCGTGCTGATTATATTTCCTGAGCCTAG
ATCATTCGTTATACAGATGTGTTGTTCTCCTCTCCTGATTGTCTAATTAA
TACTGAGATGAGTGCTTAACTTTTATTTTAAATAAACTAAAAGAGCAATA
TGTCTACATAGCTCCAGATGTAATACAAAGCTATCCTACTACTCAATAAT
AAATCCCCCATCATCCTCTAAGCTCAACCTTTCCACACAGTGCACCCTCA
ATGACTTACAACAAGTTTACGGCCATGTCAGTAGGGCATGTCCTTATCTG
CCTATATCTACTGAGGATTTGGCTCTACTCCTCAGTAGCATTCTGGAGAC
TCTCAGGTAAATTCTTAAGGCAAAATAACACCCGATGCAGAGCAGATGAT
TAGCTTACTAAACGATGCTCCTGCTAAAGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_f11.g1 MSMg01no528_f11.g1 CHROMAT_FILE:
MSMg01no528_f11.g1 PHD_FILE: MSMg01no528_f11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:55 2005
         (577 letters)



>mm_chr5_138648637_138649613
          Length = 977

 Score = 1085 bits (561), Expect = 0.0
 Identities = 573/577 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagttggtggaaggtggggcatggggcatctgataaagtggggtggggttggggagggt 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagttggtggaaggtgggtcatggggcatctgataaagtggggtggggttggggagggt 260

                                                                       
Query: 61  ctcctctgctgcttgacctatggattcgctgccccagaacttagttattgtttctttgtt 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 ctcctctgctgcttgacctatggattcgctgccccagaaattagttattgtttctttgtt 320

                                                                       
Query: 121 gtttgtttcctctcacagatcagtacagactgattaatggtctcttcaatggaaaaagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttgtttcctctcacagatcagtacagactgattaatggtctcttcaatggaaaaagag 380

                                                                       
Query: 181 tgtgcacacccaacttctagtataggagcaactgcgactcagatataaagcacctaagcc 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 tgtgcacacccaacttctagtataggagcaactgcaactcagatataaagcacctaagcc 440

                                                                       
Query: 241 cgtgctgattatatttcctgagcctagatcattcgttatacagatgtgttgttctcctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgtgctgattatatttcctgagcctagatcattcgttatacagatgtgttgttctcctct 500

                                                                       
Query: 301 cctgattgtctaattaatactgagatgagtgcttaacttttattttaaataaactaaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctgattgtctaattaatactgagatgagtgcttaacttttattttaaataaactaaaag 560

                                                                       
Query: 361 agcaatatgtctacatagctccagatgtaatacaaagctatcctactactcaataataaa 420
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 agcaatatgtctacatagctccagatgtaatacaaagcaatcctactactcaataataaa 620

                                                                       
Query: 421 tcccccatcatcctctaagctcaacctttccacacagtgcaccctcaatgacttacaaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcccccatcatcctctaagctcaacctttccacacagtgcaccctcaatgacttacaaca 680

                                                                       
Query: 481 agtttacggccatgtcagtagggcatgtccttatctgcctatatctactgaggatttggc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtttacggccatgtcagtagggcatgtccttatctgcctatatctactgaggatttggc 740

                                                
Query: 541 tctactcctcagtagcattctggagactctcaggtaa 577
           |||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctactcctcagtagcattctggagactctcaggtaa 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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