BAC Information

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BAC

Clone NameMSMg01-528F12
Chromosome5 (Build37)
Map Location 142,915,755 - 143,080,268
singlet/doubletdoublet
Overlap geneFoxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2
Upstream geneSdk1, LOC666727
Downstream geneWipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528F12.T7 (MSMg01no528_f12.b1)MSMg01-528F12.TJ (MSMg01no528_f12.g1)
ACCAG597482AG597483
length735731
length of high quality
(start - end)		660 (51 - 710)621 (84 - 704)
definitionCHROMAT_FILE: MSMg01no528_f12.b1 PHD_FILE: MSMg01no528_f12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:55 2005CHROMAT_FILE: MSMg01no528_f12.g1 PHD_FILE: MSMg01no528_f12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,915,755 - 142,916,408)(143,079,813 - 143,080,268)
sequence
NTTTAAATCCTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGG
ATCCGCGGAATTCACTACATCCGCTGGCCTCAATTATCCTGTGTGCGTCT
GCCTCCCCAGAGCTGGGGCTAAAGGCACAAGCATGCCTGGCTTCAATGTT
TCTCATTGACAGTACAAAGAAAAAGTGGTGCGTGCTGGGAGTGGGGCTGG
TTGGTGGAGCGCTGCTTGCCAAGAAAGCCTGCAAGATCCTGAGCACTGAT
AACAGCAGACGCAGTGGCCCATGGCAGCCCCAGCTCTGGGCAGGTGGAGG
CTGGAGGATCAAAAGCCGTGTGTCATACCCCAGCTACATGAGACCCTGTC
TCAAAAACAAAACAGCAGCCAGCTGGCTAAGACACTGAGTGATCATAGGT
CGGGTGTAGAGTGGCTTTTGGTCAGGTGGCACAGTGGCTGTAAAGACCTC
CCCCTCTCCCCGAACCCCCGCCCAGCAGTTGGTGCTTTGGTGTCCCCAGT
GCTCCCTTGGAGTCCCGACTTTGTGTCTGCCACATTCCTGGTACTGCTGG
GAGGGGGCAGGCCCTTGGCTCCTCCTGAGTTCCCACGGGTGCGTGGTCAC
TCTGTCCGCGGTCGCTGTTGACAGTGGCTTGGGACTTGCTCTGGACTCCC
TGGGCCTTTAAGTGTCACAACAAAAGATCTCTGTTGACATCCGTTTATCT
CCACACTGAGGAATTCCATTGAGCTTTTGTAAAGC

TCGGCGGCACTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCTAAGGCCACACAG
AGACAATGATAGGGTCCCAGCTTGTCCCACAGTGGGGCCCATGGGAAGGC
TTGGAGCTGGGGTTTAACTCCATCGTCCTCACTGTGTGGTTCTGCCTGTT
AGTGGGGCTGTTAGATGAGCTTGGTAGTCCTTCTGTGACTCTTAGTGCCT
CTTCAGTGTCTTCTAAGACACTGATTCAGACTGGGGTCCTGGGTCACTTG
GTAGAGTTCTCACCTGGAACTCATTAAGCCTTGGGTTCCAGACACAGCAC
CGCATAAAATGAATTGTGTGGCTCATGCCTGCAATCCCAGCACTTGAGAG
TGAGAGGTAGGAGGCAAGTAGATCAGAGGTTCAAAGTCACCATTGGCTAT
TGTATATTGAGTTTGAGGTCAGCATGGGTTACATGAGACTCTGTCTCAAA
ACATACAAACAAACACATCGGAGAGACTCGTATTCCAGCTAGAATTATGA
TACTGTGAAAGGCTGTTAAGTTCTAAAATAGCTTTTGACCTGAAGATGAT
GAGCAGCTGACTTCTGTGTTATCTGATGTTGCCATGTGTTGGTTATTGTA
ATTTTTTTTTAAAGATTTAACGTAAGTACACTATAGCTGTCTTCAGATGC
ACCAGAAAAGGGTGTCAGATCTCATTACGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_f12.b1 MSMg01no528_f12.b1 CHROMAT_FILE:
MSMg01no528_f12.b1 PHD_FILE: MSMg01no528_f12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:55 2005
         (660 letters)



>mm_chr5_142915549_142916608
          Length = 1060

 Score = 1218 bits (630), Expect = 0.0
 Identities = 648/654 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   ggaattcactacatccgctggcctcaattatcctgtgtgcgtctgcctccccagagctgg 66
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggaattcactacataggctggcctcaattatcctgtgtgcgtctgcctccccagagctgg 266

                                                                       
Query: 67  ggctaaaggcacaagcatgcctggcttcaatgtttctcattgacagtacaaagaaaaagt 126
           |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 267 ggctaaaggcacaagcatgcctggcttcaacgtttctcattgacaatacaaagaaaaagt 326

                                                                       
Query: 127 ggtgcgtgctgggagtggggctggttggtggagcgctgcttgccaagaaagcctgcaaga 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ggtgcgtgctgggagtggggctggttggtggagcgctgcttgccaagaaagcctgcaaga 386

                                                                       
Query: 187 tcctgagcactgataacagcagacgcagtggcccatggcagccccagctctgggcaggtg 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tcctgagcactgataacagcagacgcagtggcccatggcagccccagctctgggcaggtg 446

                                                                       
Query: 247 gaggctggaggatcaaaagccgtgtgtcataccccagctacatgagaccctgtctcaaaa 306
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 447 gaggctggaggatcaaaagccgtgtgtaataccccagctacatgagaccctgtctcaaaa 506

                                                                       
Query: 307 acaaaacagcagccagctggctaagacactgagtgatcataggtcgggtgtagagtggct 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 acaaaacagcagccagctggctaagacactgagtgatcataggtcgggtgtagagtggct 566

                                                                       
Query: 367 tttggtcaggtggcacagtggctgtaaagacctccccctctccccgaacccccgcccagc 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tttggtcaggtggcacagtggctgtaaagacctccccctctccccgaacccccgcccagc 626

                                                                       
Query: 427 agttggtgctttggtgtccccagtgctcccttggagtcccgactttgtgtctgccacatt 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 agttggtgctttggtgtccccagtgctcccttggagtcccgactttgtgtctgccacatt 686

                                                                       
Query: 487 cctggtactgctgggagggggcaggcccttggctcctcctgagttcccacgggtgcgtgg 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 cctggtactgctgggagggggcaggcccttggctcctcctgagttcccacgggtgcgtgg 746

                                                                       
Query: 547 tcactctgtccgcggtcgctgttgacagtggcttgggacttgctctggactccctgggcc 606
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tcactctgtccgcagtcgctgttgacagtggcttgggacttgctctggactccctgggcc 806

                                                                 
Query: 607 tttaagtgtcacaacaaaagatctctgttgacatccgtttatctccacactgag 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 tttaagtgtcacaacaaaagatctctgttgacatccgtttatctccacactgag 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no528_f12.g1 MSMg01no528_f12.g1 CHROMAT_FILE:
MSMg01no528_f12.g1 PHD_FILE: MSMg01no528_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:55 2005
         (621 letters)



>mm_chr5_143079248_143080268
          Length = 1021

 Score =  874 bits (452), Expect = 0.0
 Identities = 455/456 (99%)
 Strand = Plus / Minus

                                                                        
Query: 166  ctcttcagtgtcttctaagacactgattcagactggggtcctgggtcacttggtagagtt 225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 ctcttcagtgtcttctaagacactgattcagactggggtcctgggtcacttggtagagtt 962

                                                                        
Query: 226  ctcacctggaactcattaagccttgggttccagacacagcaccgcataaaatgaattgtg 285
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 961  ctcacctggaactcattaagccttgggttccagacacagcaccgcataaactgaattgtg 902

                                                                        
Query: 286  tggctcatgcctgcaatcccagcacttgagagtgagaggtaggaggcaagtagatcagag 345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  tggctcatgcctgcaatcccagcacttgagagtgagaggtaggaggcaagtagatcagag 842

                                                                        
Query: 346  gttcaaagtcaccattggctattgtatattgagtttgaggtcagcatgggttacatgaga 405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  gttcaaagtcaccattggctattgtatattgagtttgaggtcagcatgggttacatgaga 782

                                                                        
Query: 406  ctctgtctcaaaacatacaaacaaacacatcggagagactcgtattccagctagaattat 465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  ctctgtctcaaaacatacaaacaaacacatcggagagactcgtattccagctagaattat 722

                                                                        
Query: 466  gatactgtgaaaggctgttaagttctaaaatagcttttgacctgaagatgatgagcagct 525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  gatactgtgaaaggctgttaagttctaaaatagcttttgacctgaagatgatgagcagct 662

                                                                        
Query: 526  gacttctgtgttatctgatgttgccatgtgttggttattgtaatttttttttaaagattt 585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  gacttctgtgttatctgatgttgccatgtgttggttattgtaatttttttttaaagattt 602

                                                
Query: 586  aacgtaagtacactatagctgtcttcagatgcacca 621
            ||||||||||||||||||||||||||||||||||||
Sbjct: 601  aacgtaagtacactatagctgtcttcagatgcacca 566


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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