BAC Information

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BAC

Clone NameMSMg01-528F16
Chromosome5 (Build37)
Map Location 33,756,059 - 33,917,254
singlet/doubletdoublet
Overlap gene4933407H18Rik, LOC672284
Upstream genePpp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1, Spon2, Ctbp1, Maea
Downstream gene2410018C17Rik, Slbp, Tmem129, Tacc3, Fgfr3, Letm1, LOC100040332, Whsc1, Whsc2, Gm1673, LOC100040427, Nat8l, Poln, BC023882, Mxd4, Zfyve28, EG433874, A830049F12Rik, LOC100040061, Rnf4, BC037112, LOC100040480, Tnip2, Sh3bp2, Add1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528F16.T7 (MSMg01no528_f16.b1)MSMg01-528F16.TJ (MSMg01no528_f16.g1)
ACCAG597490AG597491
length763749
length of high quality
(start - end)		655 (49 - 703)566 (77 - 642)
definitionCHROMAT_FILE: MSMg01no528_f16.b1 PHD_FILE: MSMg01no528_f16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:55 2005CHROMAT_FILE: MSMg01no528_f16.g1 PHD_FILE: MSMg01no528_f16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,756,059 - 33,756,709)(33,916,688 - 33,917,254)
sequence
NAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACCCTTGCTGTGAGTCAGAGAACCCATCTGTAGCCTACCATG
CACCTCAACTGGATACCCTAGCTTCACATGCCAGTTAGGTAGCAGATATG
TCTGAAAGCACCACAGTTGGCCTGAGTGGCAGGGAAGTAGCCTGAAGACA
CTCTGACTCCATTGCCAAAGCCTTGACCACTGTCCTACCTGAATGGTCAG
GAATGCCAGGAGTAGTGGCGGTTGGGGTAGGCCTGCCCGGATCCTTTCAG
CTTGTTCAAGTTGAGGGGACCCTTGGGATACTAGGGGACTAAGTGACAGA
AGGGAATAAGGAAAGAGATGTCTCTGAGTGGATTTCATTCCAAGATAGCT
ATGTCACCCAGCACAGACCCTCTCAGACTATGGTACCAGGGCATGCAGCA
GGCAGGCTCCAGCCCTGCATCCAGAAGAAACCCACAAGGGTCACTCCTGG
TTGGTGCCAAACATCTTTTGAAATCATCAAGTTGTGCTCAGATTGGCAGG
ACCCTGAGTTTCTGAAGGACGTGGAAGCAGCCACAGGGGTGGACCTTGGT
TCATCCAGGTCCAGCAAGAAAGGCAAAGGGAAAAAGAAGAAGCACCCTAA
CCTCACGGATCTGCGAGAGCGCGCCAACACCGCCCGGGCCCGCCTCGAGA
AGAAGGTCTTTGCCAAGTAAGAGCTACTCACTGGCCCAAGGCCTTANGCT
TTAGGATGTGTTG

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTAGGGCTGAAGATCTAGACA
GATTACTAGGATAGTTCTTGGACCTCATTCTGTAACCACAGATGAGGCCC
CAGGGATGTGCCCAAGGTGGGGTGACCCTACATTCAGGGAAGCCATATGC
TCAAGCTTCTTTCCCTACAGTTGGGAGAAGCGAGGCTATTCTCCTGCACC
CCATGAAGTGATAAGGAAAAAGCCACAGGCTCCTCCTACACAGGCTTGGC
TGAGGCCACTTCCTCCTCAGTACCCTGAAGCAGGGTAGCGTCTTGTCTCT
GAGCCTTGGGAGCCTGAAGGGAGGGTATCTGGTCTGCACCTCCCTGATGC
TGCTCCAGGGCAAAGGAGGTGGGAGGGCATGTGGAACCTGTGCTAGAGGT
AGTGGTGATGGGCCAAATAGGCCATAGTGTTGGGCTGCCCGTTCAATTAG
CACTGGCATGGGCGGGCTAGGGTGGGATTGGGATGCAGGCTGTGTTCCTC
ATTTCAGGCCTGTGGCTACTGAAGTCAGCAGGGACACCTCTCCAACACTT
GATTGCCTTGCCTTGATGTAGCTGGTAGAAACTCTTTGACAGGGAGGCAG
ATACATGGCTGGACCTGTCTCAACACTTGACTAGGGAGATTTGGGGGAGC
ATTGTGGGTGTGGCATCACCCTAAGATTTCAGGCCCCAGAACCATGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_f16.b1 MSMg01no528_f16.b1 CHROMAT_FILE:
MSMg01no528_f16.b1 PHD_FILE: MSMg01no528_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:55 2005
         (655 letters)



>mm_chr5_33755855_33756909
          Length = 1055

 Score = 1189 bits (615), Expect = 0.0
 Identities = 642/651 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacccttgctgtgagtcagagaacccatctgtagcctaccatgcacctcaactgg 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacccttgctgtgaatcagagaacccatctgtagcctaccatgcacctcaactgg 264

                                                                       
Query: 65  ataccctagcttcacatgccagttaggtagcagatatgtctgaaagcaccacagttggcc 124
           ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 265 ataccctagcttcacatgccagttaggtaccagatatgtctgaaagcaccacggttggcc 324

                                                                       
Query: 125 tgagtggcagggaagtagcctgaagacactctgactccattgccaaagccttgaccactg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgagtggcagggaagtagcctgaagacactctgactccattgccaaagccttgaccactg 384

                                                                       
Query: 185 tcctacctgaatggtcaggaatgccaggagtagtggcggttggggtaggcctgcccggat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcctacctgaatggtcaggaatgccaggagtagtggcggttggggtaggcctgcccggat 444

                                                                       
Query: 245 cctttcagcttgttcaagttgaggggacccttgggatactaggggactaagtgacagaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cctttcagcttgttcaagttgaggggacccttgggatactaggggactaagtgacagaag 504

                                                                       
Query: 305 ggaataaggaaagagatgtctctgagtggatttcattccaagatagctatgtcacccagc 364
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggaataaggaaagagatgtctttgagtggatttcattccaagatagctatgtcacccagc 564

                                                                       
Query: 365 acagaccctctcagactatggtaccagggcatgcagcaggcaggctccagccctgcatcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acagaccctctcagactatggtaccagggcatgcagcaggcaggctccagccctgcatcc 624

                                                                       
Query: 425 agaagaaacccacaagggtcactcctggttggtgccaaacatcttttgaaatcatcaagt 484
           |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 625 agaagaaatccacaagggtcactcctggttggtgccagacatcttttgaaatcatcaagt 684

                                                                       
Query: 485 tgtgctcagattggcaggaccctgagtttctgaaggacgtggaagcagccacaggggtgg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgtgctcagattggcaggaccctgagtttctgaaggacgtggaagcagccacaggggtgg 744

                                                                       
Query: 545 accttggttcatccaggtccagcaagaaaggcaaagggaaaaagaagaagcaccctaacc 604
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acctcggttcatccaggtccagcaagaaaggcaaagggaaaaagaagaagcaccctaacc 804

                                                              
Query: 605 tcacggatctgcgagagcgcgccaacaccgcccgggcccgcctcgagaaga 655
           |||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 805 tcacggatctgcgagagcgcaccaacaccgcccgggcccgccttgagaaga 855


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no528_f16.g1 MSMg01no528_f16.g1 CHROMAT_FILE:
MSMg01no528_f16.g1 PHD_FILE: MSMg01no528_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:56 2005
         (566 letters)



>mm_chr5_33916488_33917454
          Length = 967

 Score = 1058 bits (547), Expect = 0.0
 Identities = 562/567 (99%), Gaps = 1/567 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctagggctga-agatctagacagattactaggatagttcttggacctcattctgtaa 59
           ||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 767 tttctagggctgagagatctagacagattactaggatagttcatggacctcattccgtaa 708

                                                                       
Query: 60  ccacagatgaggccccagggatgtgcccaaggtggggtgaccctacattcagggaagcca 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ccacagatgaggccccagggatgtgcccaaggtggggtgaccctacattcagggaagcca 648

                                                                       
Query: 120 tatgctcaagcttctttccctacagttgggagaagcgaggctattctcctgcaccccatg 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 647 tatgctcaagcttctttccctacagttgggagaagcgaggctattctcctgcgccccatg 588

                                                                       
Query: 180 aagtgataaggaaaaagccacaggctcctcctacacaggcttggctgaggccacttcctc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 aagtgataaggaaaaagccacaggctcctcctacacaggcttggctgaggccacttcctc 528

                                                                       
Query: 240 ctcagtaccctgaagcagggtagcgtcttgtctctgagccttgggagcctgaagggaggg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ctcagtaccctgaagcagggtagcgtcttgtctctgagccttgggagcctgaagggaggg 468

                                                                       
Query: 300 tatctggtctgcacctccctgatgctgctccagggcaaaggaggtgggagggcatgtgga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tatctggtctgcacctccctgatgctgctccagggcaaaggaggtgggagggcatgtgga 408

                                                                       
Query: 360 acctgtgctagaggtagtggtgatgggccaaataggccatagtgttgggctgcccgttca 419
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 acctgtgctagaggtagtgatgatgggccaaataggccatagtgttgggctgcccgttca 348

                                                                       
Query: 420 attagcactggcatgggcgggctagggtgggattgggatgcaggctgtgttcctcatttc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 attagcactggcatgggcgggctagggtgggattgggatgcaggctgtgttcctcatttc 288

                                                                       
Query: 480 aggcctgtggctactgaagtcagcagggacacctctccaacacttgattgccttgccttg 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 aggcctgtggctactgaagtcagcagggacacctctccaacacttgattgccttgccttg 228

                                      
Query: 540 atgtagctggtagaaactctttgacag 566
           |||||||||||||||||||||||||||
Sbjct: 227 atgtagctggtagaaactctttgacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 967
Length adjustment: 10
Effective length of query: 556
Effective length of database: 957
Effective search space:   532092
Effective search space used:   532092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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