Query= MSMg01no528_g13.b1 MSMg01no528_g13.b1 CHROMAT_FILE:
MSMg01no528_g13.b1 PHD_FILE: MSMg01no528_g13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:00 2005
(244 letters)
>mm_chr5_143740003_143740646
Length = 644
Score = 426 bits (220), Expect = e-124
Identities = 235/244 (96%), Gaps = 7/244 (2%)
Strand = Plus / Minus
Query: 1 tgatgggggtcttacagtaagccagctagctatgtcagggtactgtcaggttccagattc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgatgggggtcttacagtaagccagctagctatgtcagggtactgtcaggttcca----- 445
Query: 61 agggatggaccctgcgaaagtaaataagtggggtgtgatggaggaagacatccaacatct 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 --ggatggaccctgcaaaagtaaataagtggggtgtgatggaggaagacatccaacatct 387
Query: 121 gacttgcacatgctggagcatccacacacatagacactccacaccgcacacaaacaggca 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gacttacacatgctggagcatccacacacatagacactccacaccgcacacaaacaggca 327
Query: 181 caaaacaaacaaaaagcaaaacagaaaaccaatagcatctcaaagataaatataaaaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 caaaacaaacaaaaagcaaaacagaaaaccaatagcatctcaaagataaatataaaaggg 267
Query: 241 tgag 244
||||
Sbjct: 266 tgag 263
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no528_g13.g1 MSMg01no528_g13.g1 CHROMAT_FILE:
MSMg01no528_g13.g1 PHD_FILE: MSMg01no528_g13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:00 2005
(617 letters)
>mm_chr5_143562642_143563654
Length = 1013
Score = 1029 bits (532), Expect = 0.0
Identities = 590/614 (96%), Gaps = 11/614 (1%)
Strand = Plus / Plus
Query: 1 ttccttctactgggactggagagatggttaagacc-atcgtccttcaactcccagcaccc 59
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 200 ttccttctactgggactggagagatggttaagacccatcgtccttcaactcccagcaccc 259
Query: 60 acgtggcagctcccaaccgtctgtaacttcaacctgattccctcacacagacagacatgc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 acgtggcagctcccaaccgtctgtaacttcaacctgattccctcacacagacagacatgc 319
Query: 120 aggcaaatccccaatgcacataaaatagaaacaaataagttatataaaaaggaattcctt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aggcaaatccccaatgcacataaaatagaaacaaataagttatataaaaaggaattcctt 379
Query: 180 ctgagttgacaagatggctcagtacataaaggtgtgcagtgatggcccctggagcccctg 239
|||||||||||||||||||||| ||||||||||||||| |||| |||||||||||| ||
Sbjct: 380 ctgagttgacaagatggctcagcacataaaggtgtgcacagatgacccctggagcccgtg 439
Query: 240 tgatggatggagaaacccaaatgcccatacctcaactcctcaactcgtcctctgacctct 299
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgatggaaggagaaacccaaatgcccatacctcaactcctcaactcgtcctctgacctct 499
Query: 300 atgtgtgtgtaccctgtacatgccagtgtgtgcacacttgagtgcgtgcgctctctctct 359
||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||
Sbjct: 500 atgtgtgtgtaccctgtacatgccagtgtgtgcacgctcgagtgcg--cgctctctctct 557
Query: 360 ctctctcacactcaaatgcacaaatttcttgcttgcccattcttacaaacacacacacac 419
| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cacac--acactcaaatgcacaaatttcttgcttgcccattcttacaaacacacacacac 615
Query: 420 acacgcacacacgcaccacacatacaaactctcatacacatacatatatatgtgtgcaca 479
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 acac------atgcaccacacatacaaactctcatacacatacatatatatgtgtgcaca 669
Query: 480 caaacactctctccatgaattccttgcttgtccacccttacacacacacagcacacacat 539
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 670 caaacactctctccatgaattccttgcttgtctacccttacacacacacagcacacacat 729
Query: 540 acaaactgtcacacacatgcacatatatacacacacagcacacacatacaaactgtcaca 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 acaaactgtcacacacatgcacatatatacacacacagcacacacatacaaactgtcaca 789
Query: 600 cacatgcgcataca 613
||||||| ||||||
Sbjct: 790 cacatgcacataca 803
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1013
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1003
Effective search space: 608821
Effective search space used: 608821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
