BAC Information

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BAC

Clone NameMSMg01-528I08
Chromosome5 (Build37)
Map Location 22,500,270 - 22,654,526
singlet/doubletdoublet
Overlap geneLhfpl3, LOC100042101
Upstream geneReln, LOC100041982, Orc5l, LOC100042049, LOC668232, LOC100042067, LOC671222, LOC625174, EG625219
Downstream geneLOC100042082, 4930580E04Rik, BC050254, Srpk2, Pus7, Rint1, 4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528I08.T7 (MSMg01no528_i08.b1)MSMg01-528I08.TJ (MSMg01no528_i08.g1)
ACCAG597617AG597618
length742738
length of high quality
(start - end)		672 (67 - 738)624 (82 - 705)
definitionCHROMAT_FILE: MSMg01no528_i08.b1 PHD_FILE: MSMg01no528_i08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:08 2005CHROMAT_FILE: MSMg01no528_i08.g1 PHD_FILE: MSMg01no528_i08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,500,270 - 22,500,941)(22,653,903 - 22,654,526)
sequence
NNAATTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAAAGCTTGTAACAGAGAATTTAGCCATCAGAGG
AAAAACATTATAAGTTTAATTCAATCTTAAACAGTTCAGGGGGAGCTTGG
AGGTCATGAGAAGTGACTTGTCTATGGATTTACAAAGGTTTTGTTGAGTT
CAGGGTAGAACAGTGGTGAAACCCTTGTGTCTGTTCACACTGCCGTATCT
CTGCTCCTACCTCACCTTCCTTCATTATCAAGTGGGGCATATTTTGCACC
TGTTTTGACTATTTATCATTCCTTGACAGTCTCCATTTTCTCTTCCCATT
TGTGATTCATTGGACACTTTCATCACTCAACATTCATTTCACTCTATAGG
CACTTATCAATTCTAACCTGTCTCGTGGCCTTGTAATTCCTCTGGCTCGG
CCACTTGTTACATACAGCGTTCCTGGACAGATAGAAATGCAAAGACTTTT
TATCCTCAGCATATCTCTTTCTCTAGAGATTTTCTACTTCTAGTGAGTAT
CTGCTCAGAGTCCAACCTCATCTTCAAAGATCTTGAAATATCAACAATTC
CTATGTGTGGGAGCCTAGTGTAGAGGACTAGTGTTTAAATTCTAAATTAA
ATGCCCAAACATTTCTTTTTAGCAGCCAGAATGCTAATACAAACAAGGAT
GCAACGAGACCATGATATTAGCCTTTGATCCCTGAAGACTGG

NNCCCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATTAATGCTGTGC
CAGATGCCAGACTTAGGTCCTTTCTGTCTCTTTCAACATTTATTTTTGGA
TCTTTGAGCTACCTTATGACAAGGCTGGCAATCTTTCTGGAGAGGTCATG
TGGGAAATTGGAGAGAAATAGTTTTCTAATTTGTTGATCACTTGTGCCAA
GGTGGCAGGAGCCACACTACCTTGGTCCAGATAAACACATGTGTGATCTA
GTCAGTGTTGCAGGGAGCAAAGGAATTGCTATAGACCCTGGACTAAATTT
CTATCCCACTGTCTTGACCAGGATTCCTACTTTAGGCCCCTGAGTTTTGA
CGTCATTTGTTCTATGATAATACCTAGAGCGAGTTTCAATAATTGAATCA
CAATGAATGTAGATATTTAAGTGGCAAACGGAAGAAGCAAGGTCTGTCTA
TGTAGCAAGAATGGTAAGAACAGGAGGAGGAAGCCAAAAGAACAGGGGAT
TTTGAGTAAGGAGGAGGAGTGGACTGCATTGGGACTTAGTGGCACACGCG
TCACTTGTGACATTTATTAGAGTTTTGTACACAAGCCAGAGACAGTGTGC
AAGTTGGCAAGTGGTGCCCAATGAGAGTGACTGTCAGGGAGCTTTGTGAG
GAAGGAAGAGGGTAGATATGGACTGAGGAAATATTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_i08.b1 MSMg01no528_i08.b1 CHROMAT_FILE:
MSMg01no528_i08.b1 PHD_FILE: MSMg01no528_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:08 2005
         (672 letters)



>mm_chr5_22500070_22501141
          Length = 1072

 Score = 1299 bits (672), Expect = 0.0
 Identities = 672/672 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaagcttgtaacagagaatttagccatcagaggaaaaacattataagtttaattcaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagcttgtaacagagaatttagccatcagaggaaaaacattataagtttaattcaatc 260

                                                                       
Query: 61  ttaaacagttcagggggagcttggaggtcatgagaagtgacttgtctatggatttacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaacagttcagggggagcttggaggtcatgagaagtgacttgtctatggatttacaaa 320

                                                                       
Query: 121 ggttttgttgagttcagggtagaacagtggtgaaacccttgtgtctgttcacactgccgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttttgttgagttcagggtagaacagtggtgaaacccttgtgtctgttcacactgccgt 380

                                                                       
Query: 181 atctctgctcctacctcaccttccttcattatcaagtggggcatattttgcacctgtttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctctgctcctacctcaccttccttcattatcaagtggggcatattttgcacctgtttt 440

                                                                       
Query: 241 gactatttatcattccttgacagtctccattttctcttcccatttgtgattcattggaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gactatttatcattccttgacagtctccattttctcttcccatttgtgattcattggaca 500

                                                                       
Query: 301 ctttcatcactcaacattcatttcactctataggcacttatcaattctaacctgtctcgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttcatcactcaacattcatttcactctataggcacttatcaattctaacctgtctcgt 560

                                                                       
Query: 361 ggccttgtaattcctctggctcggccacttgttacatacagcgttcctggacagatagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggccttgtaattcctctggctcggccacttgttacatacagcgttcctggacagatagaa 620

                                                                       
Query: 421 atgcaaagactttttatcctcagcatatctctttctctagagattttctacttctagtga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgcaaagactttttatcctcagcatatctctttctctagagattttctacttctagtga 680

                                                                       
Query: 481 gtatctgctcagagtccaacctcatcttcaaagatcttgaaatatcaacaattcctatgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtatctgctcagagtccaacctcatcttcaaagatcttgaaatatcaacaattcctatgt 740

                                                                       
Query: 541 gtgggagcctagtgtagaggactagtgtttaaattctaaattaaatgcccaaacatttct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtgggagcctagtgtagaggactagtgtttaaattctaaattaaatgcccaaacatttct 800

                                                                       
Query: 601 ttttagcagccagaatgctaatacaaacaaggatgcaacgagaccatgatattagccttt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttttagcagccagaatgctaatacaaacaaggatgcaacgagaccatgatattagccttt 860

                       
Query: 661 gatccctgaaga 672
           ||||||||||||
Sbjct: 861 gatccctgaaga 872


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no528_i08.g1 MSMg01no528_i08.g1 CHROMAT_FILE:
MSMg01no528_i08.g1 PHD_FILE: MSMg01no528_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:08 2005
         (624 letters)



>mm_chr5_22653703_22654726
          Length = 1024

 Score = 1207 bits (624), Expect = 0.0
 Identities = 624/624 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcaggattaatgctgtgccagatgccagacttaggtcctttctgtctctttcaacattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 ttcaggattaatgctgtgccagatgccagacttaggtcctttctgtctctttcaacattt 765

                                                                       
Query: 61  atttttggatctttgagctaccttatgacaaggctggcaatctttctggagaggtcatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 atttttggatctttgagctaccttatgacaaggctggcaatctttctggagaggtcatgt 705

                                                                       
Query: 121 gggaaattggagagaaatagttttctaatttgttgatcacttgtgccaaggtggcaggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 gggaaattggagagaaatagttttctaatttgttgatcacttgtgccaaggtggcaggag 645

                                                                       
Query: 181 ccacactaccttggtccagataaacacatgtgtgatctagtcagtgttgcagggagcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ccacactaccttggtccagataaacacatgtgtgatctagtcagtgttgcagggagcaaa 585

                                                                       
Query: 241 ggaattgctatagaccctggactaaatttctatcccactgtcttgaccaggattcctact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ggaattgctatagaccctggactaaatttctatcccactgtcttgaccaggattcctact 525

                                                                       
Query: 301 ttaggcccctgagttttgacgtcatttgttctatgataatacctagagcgagtttcaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ttaggcccctgagttttgacgtcatttgttctatgataatacctagagcgagtttcaata 465

                                                                       
Query: 361 attgaatcacaatgaatgtagatatttaagtggcaaacggaagaagcaaggtctgtctat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 attgaatcacaatgaatgtagatatttaagtggcaaacggaagaagcaaggtctgtctat 405

                                                                       
Query: 421 gtagcaagaatggtaagaacaggaggaggaagccaaaagaacaggggattttgagtaagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gtagcaagaatggtaagaacaggaggaggaagccaaaagaacaggggattttgagtaagg 345

                                                                       
Query: 481 aggaggagtggactgcattgggacttagtggcacacgcgtcacttgtgacatttattaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aggaggagtggactgcattgggacttagtggcacacgcgtcacttgtgacatttattaga 285

                                                                       
Query: 541 gttttgtacacaagccagagacagtgtgcaagttggcaagtggtgcccaatgagagtgac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gttttgtacacaagccagagacagtgtgcaagttggcaagtggtgcccaatgagagtgac 225

                                   
Query: 601 tgtcagggagctttgtgaggaagg 624
           ||||||||||||||||||||||||
Sbjct: 224 tgtcagggagctttgtgaggaagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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