BAC Information

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BAC

Clone NameMSMg01-528K02
Chromosome5 (Build37)
Map Location 152,528,592 - 152,529,044
singlet/doubletsinglet
Overlap genenone
Upstream geneAprin, LOC100040180, Kl, LOC667510, Stard13, LOC630708, LOC625175, LOC100042166, EG435877, EG632649, EG632671, Rfc3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528K02.T7 (MSMg01no528_k02.b1)MSMg01-528K02.TJ (MSMg01no528_k02.g1)
ACCAG597701AG597702
length752747
length of high quality
(start - end)		481 (52 - 532)577 (80 - 656)
definitionCHROMAT_FILE: MSMg01no528_k02.b1 PHD_FILE: MSMg01no528_k02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:17 2005CHROMAT_FILE: MSMg01no528_k02.g1 PHD_FILE: MSMg01no528_k02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CACCTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCCTCCTATGAAGCAAACCTCAAATAAAATCGAGAGTGGG
CTTGGTACCCCACCACCAACAGTCTTGCCAATTTTGGACCAGTAGGCACA
TCTTCACACACACACACACACACACACACACACACACACACACACACACA
CACACACATGAGCAGCACCAGTTCAACTTAATAGGTTATAAAAAAATAGA
GGGTATGAAGCTGGGAGAGAGGAAGAGATGTGTTGGAGAGGTTGGGAGGA
GTCAGATGGAGGGAATGGGTAATGAATGTAAGACACATTGATAAAAATCT
CAAAAACACAGAGAATACAAGGTCATCTTTCTAAGACAATGAGTTGGAGT
TCAACATGGTCATGAAACCCTGGTCAAAAAAACCCAAACAATCAGAAATC
ATAAGTAGATAACTACTTAGGCATTATGTTTATAAATCACCCATGAAGTA
AACAGGATTTTTATTAAAAGGAAGAAAGAAGAATGTGAGGAAGCCAGAGA
CATCGAAGTCCTGCACCCGTGTTTCCCTCTCTGAATGTTCCCTGGGACAA
TGAAGCCCACAATGAAAATGGTCAGAGATGGCTGATAAAGGAGTTCTTGC
ACCAATTTGTATACAACAATGACTGAACAGTGAGCCTGGGGTCCCTGTAA
ACACCGAAAAAGTGCAAATTGATACCAAAGAAGAACTTACTACTTGGTGG
GG

NTTTATTATTATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATATATGCATTATTTATGTTG
TGAATGGAAAAGAATTTCCTTGGTGTTATACATCACTTTTGCCTCTTACA
GTCTTTGTGTCTACTCTTCTACATGAATCTATAAACCTTGAGGAGAGAAC
TTTGATTAAGAGGTCCGTTTTACGTCTGAGTAGTCCAATGTCTGTTATAG
AAATTATTTAATCCTTACCTATGTTTTCTACCCCATCTTTGATCATTTAG
TTACCAGATGAAAGACACACACAACCTTTGTATTTACAATAAGCCTTAAA
CAGCACAAGAGCTGGGCAGCTATCTACCCTCTCTACTACTACAATCTACA
TAGGTGGGATTTAGGTTTCCTGGGCTTAGGGTTAGAAGTCAGAGGACAAG
AAAAATGTGCAGGAAGAGCAAGGAAGTGGCTATTTGTTCATAGTTATGAG
TCATGGTCCTGAAGTCTTCCCAGTTGGATTTAAGAGCAGCTCAGATGAAA
CATAGTAAATAGTAAGTAATAACTTGGAGTAATCAATTCTAAAGTAGATT
CTTAACAACATGGCCTGTAAGCAGCTGCCCAGTTTTGGTGTTATTTAAGT
TCTGTTGTAAATATTAAGATTGTGAGAGTCTTTCTTCTAGAAACATAAAT
AGTCTAAGGCAGGGTAGAAACCCTGGGCTGGGATTTAAAATCTATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_k02.b1 MSMg01no528_k02.b1 CHROMAT_FILE:
MSMg01no528_k02.b1 PHD_FILE: MSMg01no528_k02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:17 2005
         (481 letters)



>mm_chr5_152528235_152529115
          Length = 881

 Score =  803 bits (415), Expect = 0.0
 Identities = 450/477 (94%), Gaps = 24/477 (5%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccctcctatgaagcaaacctcaaataaaatcgagagtgggcttggtaccccacca 64
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 810 gaattccctcctatgaagcaaacctcaaataaaatcgagagtgggcttggcaccccacca 751

                                                                       
Query: 65  ccaacagtcttgccaattttggaccagtaggcacatcttcacacacacacacacacacac 124
           |||||||| ||||||||||||||||||||||||||||||                     
Sbjct: 750 ccaacagttttgccaattttggaccagtaggcacatctt--------------------- 712

                                                                       
Query: 125 acacacacacacacacacacacacacacacacatgagcagcaccagttcaacttaatagg 184
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 ---cacacacacacacacacacacacacacacatgagcagcaccagttcaacttaatagg 655

                                                                       
Query: 185 ttataaaaaaatagagggtatgaagctgggagagaggaagagatgtgttggagaggttgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ttataaaaaaatagagggtatgaagctgggagagaggaagagatgtgttggagaggttgg 595

                                                                       
Query: 245 gaggagtcagatggagggaatgggtaatgaatgtaagacacattgataaaaatctcaaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gaggagtcagatggagggaatgggtaatgaatgtaagacacattgataaaaatctcaaaa 535

                                                                       
Query: 305 acacagagaatacaaggtcatctttctaagacaatgagttggagttcaacatggtcatga 364
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 534 acacagagaatacaaggtcatctttctaagacaatgagttggagttcagcatggtcatga 475

                                                                       
Query: 365 aaccctggtcaaaaaaacccaaacaatcagaaatcataagtagataactacttaggcatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aaccctggtcaaaaaaacccaaacaatcagaaatcataagtagataactacttaggcatt 415

                                                                    
Query: 425 atgtttataaatcacccatgaagtaaacaggatttttattaaaaggaagaaagaaga 481
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 atgtttataaatcacccatgaagtaaacaggatttttattaaaaggaagaaagaaga 358


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 16
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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