BAC Information

Click to search

BAC

Clone NameMSMg01-528M03
Chromosome5 (Build37)
Map Location 138,723,623 - 138,724,323
singlet/doubletsinglet
Overlap geneStag3
Upstream geneAche, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2
Downstream geneGot2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528M03.T7 (MSMg01no528_m03.b1)MSMg01-528M03.TJ (MSMg01no528_m03.g1)
ACCAG597799AG597800
length755754
length of high quality
(start - end)
707 (49 - 755)590 (79 - 668)
definitionCHROMAT_FILE: MSMg01no528_m03.b1 PHD_FILE: MSMg01no528_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:27 2005CHROMAT_FILE: MSMg01no528_m03.g1 PHD_FILE: MSMg01no528_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGGTCATCAGGCTTCCTTGTTGAGCCATTTCACCTTCTTTTA
GTTCCTCATTTTTCATCTCTAATGCTTTGAAGTGACTTTTCTTGTCCTGT
ATCTCTTAAAATTTGAATGTTTTTCCTCATATAGATGTGGCACAGTTAGA
GATAAGTAGAAATTATAATTAACTCTTTATGTGGCAGGAATGGGATGATG
CTTAAGGGAAATCATATTCTCTCTATAGGGATAGTCCCTCAACTAACGAA
GACAGCGACTTTGAAGACAGCTTAAGACGAAATGTGAAGAAGAGAGCAGC
AAAGCAACCACCCAAAGCTGTTCCAGTGAGTCTGCCATTTTGTTTAATTC
AGAATCTACTCTGGGAATTAGCAAAGAAAAACCTGGAAGGGACTCAGGTG
ATGGAATGGAAGAAGAGAGAATATTAGGATAGAGGTACCAGAATTCTTTT
AAAAAAAAGAAAAGGTTAATGATAACAAATCTCACAACATTAAAAAGAGA
CCAGTTACTTAAGATTTGAAACAATAATGGAAGCATTGCTGTGGAATTGA
CGACTTAAGGCTACCTAAAGTGATAATGATGAAATCAAATGTTACCATTA
TTTTTACAGCTTTTGTACAGCTAATATTTTTACATTTAATAGGCAGCAAA
ACATCGGAAGAAGCAGTCCCGAATAGTATCTAGTGGGAATGGCAAGAATG
AATCA
CCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATACTTTCTGTCCTCTCTTGA
GAAAGGAATAACTTCCCCCATCATCTTTTTAGATGACCTCTTTTTAAAAT
ATTCTTTGAAATATACTTGTTGGGTTTTATGTTTTTCTATCAAGTAGTGT
CTCCTGTACAAAGGACTGGTCTAAAACATGCTGATCAGATGATCAACATA
GATCCTGTGATCTCCTTAGTTTTGTGTACAAGATATATTGTTTATAGATA
CATGATATGTTATCTATGCTCTGCTGACCCTAATCTGCAGCAATAAGGGT
ACCTAAAGGTAGAGTTTGGAGTAAGACCAAGGATGACAAATAAATAAGCA
AAATAGCTGGGCCTGGAGGTCTTGCTTAAATTGATGACTTATTCCATATA
ATATTGTTAAGCAACATAGCTTCTGACATACTATTTGCAGGCTGGGGGAA
TGGCCAAGGTCAGTTGAAAGCCAAGTAAGGAAATGTTGGTAAGAAAAACA
CAGGATACCTTAGATATAGCTGCCTTAAAACTGATAACCATGGGCCAAGG
GAAAGATTTGGATCCCAGAAACTTCAACCTTGACTTCTTAGAGTCCATAG
CTTCAGATCCAGATAGGATTTGTTAAATCTATTCCTGGGAGTAAACATAA
CTGTTTGTATTTTCTATATAGACTGTTCTGTTTGTACTTTCATTATCTTG
TCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_m03.b1 MSMg01no528_m03.b1 CHROMAT_FILE:
MSMg01no528_m03.b1 PHD_FILE: MSMg01no528_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:27 2005
         (707 letters)



>mm_chr5_138723419_138724523
          Length = 1105

 Score = 1324 bits (685), Expect = 0.0
 Identities = 698/703 (99%), Gaps = 2/703 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctggtcatcaggcttccttgttgagccatttcaccttcttttagttcctcatttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggtcatcaggcttccttgttgagccatttcaccttcttttagttcctcatttt 264

                                                                       
Query: 65  tcatctctaatgctttgaagtgacttttcttgtcctgtatctcttaaaatttgaatgttt 124
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 265 tcatctctaatgctttgaagtgacttttcttgtcctgtatct--taaaatttgaatgttt 322

                                                                       
Query: 125 ttcctcatatagatgtggcacagttagagataagtagaaattataattaactctttatgt 184
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 323 ttcctcatatagatgtggcacagttagagataaatagaaattataattaactctttatgt 382

                                                                       
Query: 185 ggcaggaatgggatgatgcttaagggaaatcatattctctctatagggatagtccctcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggcaggaatgggatgatgcttaagggaaatcatattctctctatagggatagtccctcaa 442

                                                                       
Query: 245 ctaacgaagacagcgactttgaagacagcttaagacgaaatgtgaagaagagagcagcaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctaacgaagacagcgactttgaagacagcttaagacgaaatgtgaagaagagagcagcaa 502

                                                                       
Query: 305 agcaaccacccaaagctgttccagtgagtctgccattttgtttaattcagaatctactct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agcaaccacccaaagctgttccagtgagtctgccattttgtttaattcagaatctactct 562

                                                                       
Query: 365 gggaattagcaaagaaaaacctggaagggactcaggtgatggaatggaagaagagagaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gggaattagcaaagaaaaacctggaagggactcaggtgatggaatggaagaagagagaat 622

                                                                       
Query: 425 attaggatagaggtaccagaattcttttaaaaaaaagaaaaggttaatgataacaaatct 484
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 623 attaggatagaggtaccagaattctttttaaaaaaagaaaaggttaatgataacaaatct 682

                                                                       
Query: 485 cacaacattaaaaagagaccagttacttaagatttgaaacaataatggaagcattgctgt 544
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 683 cacaacattaaaaagagaccagttacttaagatctgaaacaataatggaagcattgctgt 742

                                                                       
Query: 545 ggaattgacgacttaaggctacctaaagtgataatgatgaaatcaaatgttaccattatt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ggaattgacgacttaaggctacctaaagtgataatgatgaaatcaaatgttaccattatt 802

                                                                       
Query: 605 tttacagcttttgtacagctaatatttttacatttaataggcagcaaaacatcggaagaa 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tttacagcttttgtacagctaatatttttacatttaataggcagcaaaacatcggaagaa 862

                                                      
Query: 665 gcagtcccgaatagtatctagtgggaatggcaagaatgaatca 707
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 gcagtcccgaatagtatctagtgggaatggcaagaatgaatca 905


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1105
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1095
Effective search space:   763215
Effective search space used:   763215
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)