BAC Information

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BAC

Clone NameMSMg01-528N19
Chromosome5 (Build37)
Map Location 138,806,993 - 138,807,351
singlet/doubletsinglet
Overlap genenone
Upstream geneEphb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1
Downstream gene2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528N19.T7 (MSMg01no528_n19.b1)MSMg01-528N19.TJ (MSMg01no528_n19.g1)
ACCAG597878AG597879
length763770
length of high quality
(start - end)		689 (49 - 737)363 (78 - 440)
definitionCHROMAT_FILE: MSMg01no528_n19.b1 PHD_FILE: MSMg01no528_n19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:35 2005CHROMAT_FILE: MSMg01no528_n19.g1 PHD_FILE: MSMg01no528_n19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATATAACTCAAGCATATCTTATAGTGGTTGACCTGATGCTGC
TTGTATTCTAATGCTAATATTGGATCCCCAAGACTGATTGCTCCAGAGAC
GTAGACATAAACACTAAGTGACACCATTCCCAAATTATTTCTAATTGGTA
AATAAGGAGGCCAACAGCTCATAGCTCGGGAGAAGAGACATTAGTGTGGT
TTTGGTTTCATGATGTTGGAGTTGGAGGAGAACCATCAGGAAAAAAGTTT
CAGGAAGAGAGAGAAGAAGCCAATGTAGGTTAGAAGGGCTACCATGAGGG
CTGTCCAATTGGTGTAAAGAGCAACCAAGGTGAAACATAGCGAGGAGTAA
ATAATAACTCAGGGTTGTCTATAGGAAAGTCAAGTCTAACTGCATAGAGG
GTAGGCAACACTGCCCAGCTCTTGTACTTTTAAGGCTTATTGTAAATGTA
ATGGATGTGTGTTGTTTTTCTTTGAGAACTAACTAATCATAGAAACTCCC
AGGGCAGGATTAAATGATTTCTACAACAGTATCTTCTAAATTAATCCCAA
GAAAACACCAAATGCAGAAAGAAATAAGGAAAATGATTTAAGGTATTAAA
ATAGTTTGATTCTTTAAAAATAAATAAAAAGTAGAGTTTAATTTAAAAGA
TAGAGATACNAAAGAGAATCAAAAGTAAATGATGACAGAAATGAAAATTT
CATTAAGTTATAN

NACCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAAACCCAAGGTCTTGCTAAGGA
CGAACTAGGACTGTTGGAACACTGGCAGATGGCTTTAGCTACGTCAGAAT
TCAATCTTAAAAGGCACTTATGACAGGAAAATATTGAAAGAGAGCACGTG
GGTCCATACACTAGACTAACGCAGGAATGGAACACGAGAATGAAAAATTA
CTGTATGGGTAGGGAACGCTAGACTCCAGGAGGAGAGCTTCCTTGAAACT
CTTTTGCCTCATGAGTGACTTTTAAGCCTCTCGGCTTGTCCAGTTGACTC
GACCAGAGAGCGTAGCATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAA
AAATGGGAATGGGTGGGTAGGGAANGTGGGGGGGGAGGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNTNNNNTN
NNTNTNNNNTNNNNNTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTNTT
TTTTTTTTTNNTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTNTTTTTTNTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_n19.b1 MSMg01no528_n19.b1 CHROMAT_FILE:
MSMg01no528_n19.b1 PHD_FILE: MSMg01no528_n19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:35 2005
         (689 letters)



>mm_chr5_138806263_138807351
          Length = 1089

 Score =  673 bits (348), Expect = 0.0
 Identities = 356/359 (99%)
 Strand = Plus / Minus

                                                                        
Query: 331  ggtgaaacatagcgaggagtaaataataactcagggttgtctataggaaagtcaagtcta 390
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1089 ggtgaaacatagcgaggagtaaataataactcagggttgtctataggaaagtcaagtcta 1030

                                                                        
Query: 391  actgcatagagggtaggcaacactgcccagctcttgtacttttaaggcttattgtaaatg 450
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1029 actgcatagagggtaggcaacactgcccagctcttgtatttttaaggcttattgtaaatg 970

                                                                        
Query: 451  taatggatgtgtgttgtttttctttgagaactaactaatcatagaaactcccagggcagg 510
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969  taatggatgtgtgttgtttttctttgagaactaactaatcatagaaactcccagggcagg 910

                                                                        
Query: 511  attaaatgatttctacaacagtatcttctaaattaatcccaagaaaacaccaaatgcaga 570
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909  attaaatgatttctacaacagtatcttctaaattaatcccaagaaaacaccaaatgcaga 850

                                                                        
Query: 571  aagaaataaggaaaatgatttaaggtattaaaatagtttgattctttaaaaataaataaa 630
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849  aagaaataaggaaattgatttaaggtattaaaatagtttgattctttaaaaataaataaa 790

                                                                       
Query: 631  aagtagagtttaatttaaaagatagagatacnaaagagaatcaaaagtaaatgatgaca 689
            ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 789  aagtagagtttaatttaaaagatagagatacaaaagagaatcaaaagtaaatgatgaca 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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