BAC Information

Click to search

BAC

Clone NameMSMg01-529D01
Chromosome5 (Build37)
Map Location 117,779,771 - 117,780,191
singlet/doubletsinglet
Overlap geneBC023744
Upstream gene4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943, Gm1684, LOC665073, Suds3, Taok3, Pebp1, LOC100042313, LOC100039359
Downstream geneLOC667175, Wsb2, Rfc5, Ksr2, Nos1, Fbxo21, Tesc, Fbxw8, Hrk, Tmem118, 2410131K14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529D01.T7 (MSMg01no529_d01.b1)MSMg01-529D01.TJ (MSMg01no529_d01.g1)
ACCAG598128AG598129
length837745
length of high quality
(start - end)
109 (78 - 186)663 (80 - 742)
definitionCHROMAT_FILE: MSMg01no529_d01.b1 PHD_FILE: MSMg01no529_d01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:03 2005CHROMAT_FILE: MSMg01no529_d01.g1 PHD_FILE: MSMg01no529_d01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCCCTTATNTGCGGCCGCTATACGACTCCTATTCTCTGAGGATCCGC
GGAATTCTGGAGTTTTTTCCGGAGGAATACCTCTTTGTGGGCTTGAGGTA
CAATTGAGTTCCTGAGACTCGAGAGAGGAGGAGAGGGCAGGGAGAGGAAG
AGGAGAAGGAGGAAGGGGAAGGTAGGGGATGAGGGAGCGAACCGCCCCCC
GCGGTTCTCCCCCCCCCCCCCCCTGCCTTCCCGCCCTTTCCCCTTCCCGC
TCTTCCCCCCTCCTCCCCCCTCCCCTTCCCCTGCCCTCCCCCTTCTCCCT
TTCCCCGTCCCTCCCTTTTCTCCCTCCTCTTTTTCCTCCCCCCCCCCCGC
ACCCCGCCTTCCCCCCTCCCCTCTCTCCCCCCCCTCACCCCCCCCCCCCC
TTCCCTCCCCTCCCCTTCCCTCCCCCTCTCTTGTTTTTCTCACCCCTCCC
CTTCTCCCCCCTCTCCCCCCCCCCCCCCCTCTTTTCCCCCGCCCCCTCCC
CTTCTTTCCCCCCCTTTTCCCTTACTCTTCTTCTCCCTCCCTCCCTTCCC
CCCTCTTCTTTTCTCTTTTCTTCTCCTCCTCCCTCCCCCCTTCCTTTCAC
CCCCCCCCCCCCCCCCTCCTCCTCTTCCCCCCCTCCTCTTTCCCCCCTCC
CGCCCCCCTCTCCTCCCTCCCCCGCCCCCCTCCCCTCCTTCCATCCCTCC
CCCCCTCCTTTTCCCCACCCCCCCTCCCGTTCCCCTCTCTTTTCTCCCCC
TCCCCCCTCTCCCTCCCTCTCCCCTATTCCTCCACCCTCCTTCTCTCTTC
TTCCTCCCTTTCTCCTCCCTCTCCCCTCTCTCCCTCC
NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTAACAGCTGGATGTGGCA
GGGTGAGTTTCCCAACACTCCGACAGTAAGTAGTCAGATGGGAGGCAGAA
ACAAGAGAATCCCTGGGAACCAAAAGGCTAGCCTGTGCTACACAGTGCAC
CTGGACAAATGAGAAACCCTGCCCACCTGGAAGAAGTTGAAAAAGAATTC
CCGAGAGCTGTCTTCTGGACTCTGACAGGCAAGTACTTACTCTCCCCAGC
ATAATAATATATAAATAAAATTTTAGAAGGTAGACAAGAGGGCTCAGCAG
GTAAAGGTGCTTGCCACCAAGCCTGATGACCTGAGTTTGATACCCACGGA
GTGGAAGGAGGGCAATGTCTCCCACAAGCTGTCCTCTGACCTCCCCATGG
GCACCATACGCACACACACATAAATTAAAAAAGAAAAACATGTAAAAAAT
GTTTTAAAATAAAAAGTCGGAACTGGGGAGACAGCTGGGAGTTAAAGGTG
CTTGCGGCTCTTGCACAGGACCCGGGTTCTGTTCCCAGCACCCATGCCAA
AAGGCTCACAAATGCCTGTAAGTCCAGCTCCACGGACCTGATGACCTCTC
CAGTTTCCAGAGACATCCGTGCATTTGTGGCACACACGCAGACACATAGA
TAAAAATCAATCTTGTGTGTTTTGACACAGGTTCATACTTGGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_d01.g1 MSMg01no529_d01.g1 CHROMAT_FILE:
MSMg01no529_d01.g1 PHD_FILE: MSMg01no529_d01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:03 2005
         (663 letters)



>mm_chr5_117779771_117780833
          Length = 1063

 Score =  706 bits (365), Expect = 0.0
 Identities = 411/433 (94%), Gaps = 14/433 (3%)
 Strand = Plus / Minus

                                                                       
Query: 8   agctggatgtggcagggtgagtttcccaacactccgacagtaagtagtcagatgggaggc 67
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 421 agctggatgtggcagggtgagtctcccaacactccgacagtaagtagtcagatgggaggc 362

                                                                       
Query: 68  agaaacaagagaatccctgggaaccaaaaggctagcctgtgctacacagtgcacctggac 127
           ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 361 agaaacaagagaacccctgggaaccaaaaggctagcctgtgctgcacagtgcacctggac 302

                                                                       
Query: 128 aaatgagaaaccctgcccacctggaagaagttgaaaaagaattcccgagagctgtcttct 187
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaatgagaaaccctgcccaccttgaagaagttgaaaaagaattcccgagagctgtcttct 242

                                                                       
Query: 188 ggactctgacaggcaagtacttactctccccagcataataatatataaataaaattttag 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggactctgacaggcaagtacttactctccccagcataataatatataaataaaattttag 182

                                                                       
Query: 248 aaggtagacaagagggctcagcaggtaaaggtgcttgccaccaagcctgatgacctgagt 307
           |||||||||||||||||||||||||||           ||||||||||||||||||||||
Sbjct: 181 aaggtagacaagagggctcagcaggta-----------caccaagcctgatgacctgagt 133

                                                                       
Query: 308 ttgatacccacggagtggaaggagggcaatgtctcccacaagctgtcctctgacctcccc 367
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 132 ttgatacccacggagtggaaggagggcaatgcctcccacaagctgtcctctgacctcccc 73

                                                                       
Query: 368 atgggcaccatacgcacacacaca-taaatt-aaaaaagaaaaacatgtaaaaaatgttt 425
           | ||||||||||||| |||||||| |||||| |||||| |||||||||| ||||||||||
Sbjct: 72  acgggcaccatacgcgcacacacattaaattaaaaaaacaaaaacatgt-aaaaatgttt 14

                        
Query: 426 taaaataaaaagt 438
           |||||||||||||
Sbjct: 13  taaaataaaaagt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)