Query= MSMg01no529_f14.b1 MSMg01no529_f14.b1 CHROMAT_FILE:
MSMg01no529_f14.b1 PHD_FILE: MSMg01no529_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:16 2005
(652 letters)
>mm_chr5_71466910_71467961
Length = 1052
Score = 1021 bits (528), Expect = 0.0
Identities = 620/652 (95%), Gaps = 5/652 (0%)
Strand = Plus / Plus
Query: 5 gaattctttgttct-gttctgagccccattttttaatggggttctttgattttctggagt 63
|||||||||||| | | |||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 202 gaattctttgtt-tagctctgagccccattttttaatggggttatttgattatctggagt 260
Query: 64 ccaccttcttgagttctttatatatattggatattagtcccctatctgatttaggatagg 123
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 261 ccaccttcttgagttctttatatatattggatattagtcccctatccgatttgggatagg 320
Query: 124 taaagatcctttcccaatctgttggtggcctttttgtcttattgacaatgtcttttgcct 183
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 321 taaagatcctttcccaatctgttggtgatctttttgtcttattgacgatgtcttttgcct 380
Query: 184 tgcagaagctctgcaattttatgagtttccatttatcgattcttgatcttacagcacaag 243
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcagaagctttgcaattttatgaggttccatttatcgattcttgatcttacagcacaag 440
Query: 244 tcattgctgttctattcaggaagttttcccctgtaccgatatcttcgagggttttcccta 303
||||||||||||||||||||| ||||||||||| || |||||||||||| |||||||||
Sbjct: 441 ccattgctgttctattcaggaatttttcccctgtgccaatatcttcgaggcttttcccta 500
Query: 304 cttt---ctctatacgtttcagtttctctggttttatgtggtgttccttaattcacttag 360
|||| ||||||| |||||||| ||||||||||||||||| |||||||||| |||||||
Sbjct: 501 ctttctcctctataagtttcagtgtctctggttttatgtggagttccttaatccacttag 560
Query: 361 atttgaccttagtacaaggagataggaatggatcaattcgcattcttctacatgataaca 420
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 atttgaccttaatacaaggagataggaatggttcaattcgcattcttctacatgataacc 620
Query: 421 gccttttgtgccagcaccatttgttgaaaatgctgtcttttttccactggatggtttttg 480
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 621 gccttttgtgccatcaccatttgttgaaaatgctgtcctttttccactggatggtttttg 680
Query: 481 ctcccttgtcaaagatcaagtgaccataggtgtgtgcgttacactatataaagttagttc 540
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 681 ctcccttgtcaaagatcaagtgaccatagatgtgtgcattacactatataaagttagttc 740
Query: 541 ccaacttcaaatataattagtatctccccacctagttaactacaataattgaaatatatt 600
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 741 ccaacttcaaatataattagtatctccccacctatttaactacaataattgaaatatatt 800
Query: 601 tatcaaagaaattgccaccatatcattatatttaaaactagatctcatgtag 652
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tatcaaagaaattgccaccatatcattatatttaaaactagatctcatgtag 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no529_f14.g1 MSMg01no529_f14.g1 CHROMAT_FILE:
MSMg01no529_f14.g1 PHD_FILE: MSMg01no529_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:16 2005
(694 letters)
>mm_chr5_71589597_71590692
Length = 1096
Score = 1290 bits (667), Expect = 0.0
Identities = 680/685 (99%), Gaps = 2/685 (0%)
Strand = Plus / Minus
Query: 12 ctctccactcagttatacacactgctctactctattatgataacgcttaaagatgagagt 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1096 ctctccactcagttatacacactgctctactctattatgataacgcttaaagatgagagt 1037
Query: 72 tctcttgtttcatttatttccagggctgttattaaaggagtgagttttcttccccccttt 131
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1036 tctcttgtttcatttatttccaaggctgttattaaaggagtgagttttcttccccccttt 977
Query: 132 gtgtgcatcctgggggttgaatccaggtcctgatgcttgtgtggcaatctcctttagctg 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976 gtgtgcatcctgggggttgaatccaggtcctgatgcttgtgtggcaatctcctttagctg 917
Query: 192 gtgaggcatcttgctagctctgaaatgctattatctaagtctgtgaaggacagacctttc 251
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 916 gtgaggcatcttgctagctctgaaaggctattatctaagtctgtgaaggacagacctttc 857
Query: 252 tttgaacttctttggcatccctcagactctaggagtctcctgatatacatgctccaaaat 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 tttgaacttctttggcatccctcagactctaggagtctcctgatatacatgctccaaaat 797
Query: 312 agacaaataaatgattatttcctgaatcattgacttattaaaaatattattctctgcttt 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 agacaaataaatgattatttcctgaatcattgacttattaaaaatattattctctgcttt 737
Query: 372 ggatgcaactttatatgttcaggcttttaacaattgtgtactaagttgtctttcgagtgt 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ggatgcaactttatatgttcaggcttttaacaattgtgtactaagttgtctttcgagtgt 677
Query: 432 ttgtattgctttcattttataatagactatgattgtaaacagtctatcaagttaaatgga 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ttgtattgctttcattttataatagactatgattgtaaacagtctatcaagttaaatgga 617
Query: 492 tttggagagatatcaaatgtataatttaatagacagacatgtctttagagataatccaat 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tttggagagatatcaaatgtataatttaatagacagacatgtctttagagataatccaat 557
Query: 552 catctc--agaaccatacacagcatgggcctttgtaaaaaggcaaatgtggtttctctat 609
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 556 catctcttagaaccatacacagcatgggcctttgtaaaaaggcaaatatggtttctctat 497
Query: 610 tagaagcaatataatagagaaaccaactaagcatcgaaatggctttccataaacaataga 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tagaagcaatataatagagaaaccaactaagcatcgaaatggctttccataaacaataga 437
Query: 670 attttcttctttcaccttttattgt 694
|||||||||||||||||||||||||
Sbjct: 436 attttcttctttcaccttttattgt 412
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1096
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1086
Effective search space: 742824
Effective search space used: 742824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
