NCCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTATTTTTACAGTAATGTGTTGTGATGTCTTAGAAATTTACTT
TTATGTTTCCTATGCAGAGTGTGTTTTAAAGAGGGGACAAGGCTTTTATT
TTTGTATTTTATTTTTTATTATTTAGAACAATTTTATTTAAATATATTTT
TTACCATATTCTTTCCCATCCCACAAAGCCTTCCAGATCCCCTCCCCTTC
CCTACTCACTCAACTTTAAGTTCGTTCTCTAAAAACAAAAACCCAATATA
GCAATAAAATCTCACCAAACCAAAAAATGAAAATAAAACAACACCTCAAA
AGAAAAAAAAAACACCAACTCTAACCAAATAAAAGAACATGATACACACA
CACACACACACACACACACACACACACACACAAAGAGAGAGATATACACA
CACACACACACACACACACCTGTGGAGTCTATTATATGTTGCTCCTGAAT
ATGAGGCATGCCCTGGAGTAATTGATATGCCCAGTGTGACTCCTTTGAAA
TACATACATACATAATACATAATACATACATCCATATTTTTATTTTTCAC
AATGTTTTTATTGATTATTTGTGAATTTCACATCATGAACCCTGATCATA
TTCACTTCTCAAATCCTCCCAGGTTTAGCTCCACCTTTGTGACTTACCCC
TCCAAAGAAGAAAAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGN

NNCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAA
TGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAA
ATGCAAATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTC
TAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAA
GAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCATGT
CTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAA
TACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGAC
ACATGCTCCACTATGTTCATAGCACCATTATTTATAATAGCCAGAAGCTG
GAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGT
ACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATG
AAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGT
AACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGAT
ATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTAAAC
ACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACA

Query= MSMg01no529_k10.b1 MSMg01no529_k10.b1 CHROMAT_FILE:
MSMg01no529_k10.b1 PHD_FILE: MSMg01no529_k10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:42 2005
         (657 letters)



>mm_chr5_13620080_13621134
          Length = 1055

 Score =  971 bits (502), Expect = 0.0
 Identities = 596/662 (90%), Gaps = 60/662 (9%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtatttttacagtaatgtgttgtgatgtcttagaaatttacttttatgtttcc 64
           |||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 691 gaattcagtatttttaaagtaatgtgttgtgatgtcttacaaatttagttttatgtttcc 632

                                                                       
Query: 65  tatgcagagtgtgttttaaagaggggacaaggcttttatttttgtattttattttttatt 124
           ||||||||||||||||||||||||      ||||||||||||||||||||||||||||||
Sbjct: 631 tatgcagagtgtgttttaaagagg------ggcttttatttttgtattttattttttatt 578

                                                                       
Query: 125 atttagaacaattttatttaaatatattttttaccatattctttcccatcccacaaagcc 184
           |||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||
Sbjct: 577 atttagaacaattttatttaaatata-ttttta-catattatttcccatcccacaaagcc 520

                                                                       
Query: 185 ttccagatcccctccccttccctactcactcaactttaagttcgttctctaaaaacaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ttccagatcccctccccttccctactcactcaactttaagttcgttctctaaaaacaaaa 460

                                                                       
Query: 245 acccaatatagcaataaaatctcaccaaaccaaaaaatgaaaataaaacaacacctcaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||
Sbjct: 459 acccaatatagcaataaaatctcaccaaaccaaaaaatgaaaataa---gacacctcaaa 403

                                                                       
Query: 305 ag-aaaaaaaaaacaccaactctaaccaaataaaagaacatgatacacacacacacacac 363
           || |||||||||||||||| ||||||||||||||||||||||||      ||||||||||
Sbjct: 402 agaaaaaaaaaaacaccaattctaaccaaataaaagaacatgat------acacacacac 349

                                                                       
Query: 364 acacacacacacacacacacacaaagagagagatatacacacacacacacacacacacac 423
           ||||||||||||||||||||||||                                  ||
Sbjct: 348 acacacacacacacacacacacaa----------------------------------ac 323

                                                                       
Query: 424 ctgtggagtctattatatg--------ttgctcctgaatatgaggcatgccctggagtaa 475
           |||||||||||||||||||        |||||||||||||||||||||||||||||||||
Sbjct: 322 ctgtggagtctattatatgttggtcaattgctcctgaatatgaggcatgccctggagtaa 263

                                                                       
Query: 476 ttgatatgcccagtgtgactcctttgaaatacatacatacataatacataatacatacat 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttgatatgcccagtgtgactcctttgaaatacatacatacataatacataatacatacat 203

                                                                       
Query: 536 ccatatttttatttttcacaatgtttttattgattatttgtgaatttcacatcatgaacc 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ccatatttttatttttcacaatgtttttattgattatttgtgaatttcacatcatgaacc 143

                                                                       
Query: 596 ctgatcatattcacttctcaaatcctcccaggtttagctccacctttgtgacttacccct 655
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ctgatcatattcacttctcaaatcctcccaggtttagctccacctttgtgacttacccct 83

             
Query: 656 cc 657
           ||
Sbjct: 82  cc 81


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 13
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1055
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1045
Effective search space:   676115
Effective search space used:   676115
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)