BAC Information

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BAC

Clone NameMSMg01-529N02
Chromosome5 (Build37)
Map Location 85,380,342 - 85,380,537
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha5, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529N02.T7 (MSMg01no529_n02.b1)MSMg01-529N02.TJ (MSMg01no529_n02.g1)
ACCAG598607AG598608
length734803
length of high quality
(start - end)
610 (51 - 660)215 (86 - 300)
definitionCHROMAT_FILE: MSMg01no529_n02.b1 PHD_FILE: MSMg01no529_n02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:55 2005CHROMAT_FILE: MSMg01no529_n02.g1 PHD_FILE: MSMg01no529_n02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGTAATATGTATCTGACTGATTGTTAAGAGTTTTGGAGCC
GGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAG
GCGGATTTCTGATTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGA
CAGCCAGGGCTGCACAGAGAAACCCTGTCTCAAACACACACACACACACA
CACACACACACACACACACACACACACACACACACACACACACACACACA
AAGAGTTTTGGCTTAATAACCTGACCCATCTGGGGATCCAACCCATCTGC
AGACACCAAACACAGACACTAGTGCTGATGTCAAGAAGCACTTTCTGACA
GGAGCCTGGTATGGTTGTCCCCTGAGAGGCTCTGCCAAAGCATGACCAAC
ACAGATGTGGATAGTCACAGCCAACCATTGGACTGAGCACCAGGATACCA
ATAGAGGAGTTAGGGGAAGGACTGAAAAAGATGCAGGTGTTTGCAACCCC
ATAGGAAGAGCAACAGCAACCAACCAGACTTCCCCCACCCCACACTCCCG
CTCTGTCTGCCAGAGCTCCCAGGCACTAAACCACCAACCAAAGAGTATCC
ATGGAGGGACCAATGGCTTCAACTGATTATGTAACAGAGGATTGCCTTAT
CTGTCATCAGTGCGAGGGGAGGCCCTTGATCCTG
NATTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTTTCACTGCTTT
TATAGTGACATATTATTTACTTTGTTTAATATGAATATAAGTCTTTCAAA
TTCTGAGAAAATTGGATTTCTTAAATTCAGTTTGTAATAATAATAACTGA
AGTTACTGAAGTGTGTGTGTGCATGTGCATGTTTGAGTGTGTGTATTTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGN
NNNNNNNNNNNNNTNNNNNNNNNNNNNNNNTTTTTTTTNNTTTTTTTNTT
TNNTTTNTNTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTNTNNTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTNCCCCCCCTCCTCTTTTTTTTTTT
TCCTTCCCTCTTTTCTCCCCCTTCTTTTTTTCTCTTTCTTTTTCCCTCCC
TTTTTTTTTTCCTTTTTTTTTCTTTCTTCTCTCCCTCTTCTTTTTTTTTT
CTTTTCCCTCTTTTTCTCCCTCCTCTCTCTTTTCCTCTTCTTTTTCCTCC
TTTTCTTTCTTTTTCTCTTCTCCTTTTTCCGTTTTTTTCTTTCTCTTCCC
TCCCTCCCCCTTTTTCTCCCTTCTTCCTTNTCCCTTTCTCTTTTTTTCTC
CTTCTTCTTTTTCCCCCTCCTTTCTTTTTCTTTTTTTNTTNCTCTCCCCC
TCTTTTTCTCTTCTTCTCCTCCGCTTTCTGTTACTCCTCTCTTTTTTCCC
TCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_n02.g1 MSMg01no529_n02.g1 CHROMAT_FILE:
MSMg01no529_n02.g1 PHD_FILE: MSMg01no529_n02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:55 2005
         (215 letters)



>mm_chr5_85380139_85380753
          Length = 615

 Score =  344 bits (178), Expect = 2e-99
 Identities = 191/196 (97%), Gaps = 2/196 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   tttcactgcttttatagtgacatattatttactttgtttaatatgaatataagtctttca 63
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 204 tttcactgcttttatagtgacatactatttactttgtttaatatgaatataagtctttca 263

                                                                       
Query: 64  aattctgagaaaattggatttcttaaattcagtttgtaataataataactgaagttactg 123
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 264 aattctgagaaaattggatttcttaaattcagtttgtaatactaataactgaagttactg 323

                                                                       
Query: 124 aagtgtgtgtgtg--catgtgcatgtttgagtgtgtgtatttgtgtgtgtgtgtgtgtgt 181
           |||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 324 aagtgtgtgtgtgtgcatgtgcatgtttgagtgtgtgtatttgtgtatgtgtgtgtgtgt 383

                           
Query: 182 gtgtgtgtgtgtgtgt 197
           ||||||||||||||||
Sbjct: 384 gtgtgtgtgtgtgtgt 399


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 615
Length adjustment: 9
Effective length of query: 206
Effective length of database: 606
Effective search space:   124836
Effective search space used:   124836
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)