BAC Information

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BAC

Clone NameMSMg01-529N05
Chromosome5 (Build37)
Map Location 33,537,059 - 33,537,769
singlet/doubletsinglet
Overlap genenone
Upstream genePlb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1
Downstream geneSpon2, Ctbp1, Maea, 4933407H18Rik, LOC672284, 2410018C17Rik, Slbp, Tmem129, Tacc3, Fgfr3, Letm1, LOC100040332, Whsc1, Whsc2, Gm1673, LOC100040427, Nat8l, Poln, BC023882, Mxd4, Zfyve28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529N05.T7 (MSMg01no529_n05.b1)MSMg01-529N05.TJ (MSMg01no529_n05.g1)
ACCAG598613AG598614
length748750
length of high quality
(start - end)		560 (51 - 610)582 (81 - 662)
definitionCHROMAT_FILE: MSMg01no529_n05.b1 PHD_FILE: MSMg01no529_n05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:56 2005CHROMAT_FILE: MSMg01no529_n05.g1 PHD_FILE: MSMg01no529_n05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTCCCTCTCCTAGTCCAAGAATAGAGTTTGGAATGTATTA
GGCCTATAATCTATAGTTGTTGAAATCTTAACAGATTGGGAAAAAATTCT
TATCTTCTAGGAGGCGGTGTTTTGGTCAATTGTAATTTTTTTTTTTTTTT
TGCCTTAGAGCTAGAGGCTTCCTGTGTTTCCTAGGCTGTGTTGAGTTCAA
GGGCTCAAACCATTCACCTACCTCAGACCTCTGTGAATCTGAATGCTGTA
TGCCCAACTCAGGAGCTGTGCATTTTGCAGAGCTATTTTCTTTTGTCTTT
TGAAAACAATAAACTGGTTTTGATTTTCTTTAGCCCAAGTGGAATGTTAA
TCTGATTAAATAAGTGTTGGAGATGTTTTAGGGCAGTTCATTCCTGGGAA
AGAACAGGAGAGAAGGAGGCTTTGATAAAGCAAGAAGCACAAGAGATAGT
GGATTGAGAAGAAGTGACTATTGCAATGTGAGTTGGGGAAATGGTCCCAG
TGCTGGCTATGCTGCAAGTGTCATGTGTGTATGTCAAGTGTGCTTAGACT
GTGGAGACCCAGGCAAGGACAGTCCTAGTCCACATTCAGTGGACCTCAGA
ATGCTCTTCAGGCATATATCAGATAATTAGATGATTGAAATGTAGAGCTT
GAGCTTGGACCAATTAGTGCTCCAGCTTTCCCAAGAGTGAGGCTTTGC

NCCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAGGGGCAGGAACCTGGA
TTTGGGAGCTGGTGCAGAGGCCATGGAAGGTGCTACTGGTTTACTACTCA
TAGCTTTTTCCAGCCTATCCCACCAGCCCAGGGAGAGCACCACTCATGAT
GGTCTGGGTCCTCCTTCATTACACTATAAGAAAATTCCCTGACAACAGGT
TGTCCAAGAGGAGTCCTGGTGAGGATCCAGTATTGATGGTGTGGCAGAAG
CCAGGGGTCTCAGACCAGACCAATGACTCACTGCAATCAATATTTGCAAG
TAAAGATGTGTAGACCAATGAGTATACTGTGTAACACACCATAAAACACC
ATAGATTCCACAGTGAGGTTTTGGCCTTTTGTTTCTAACTTTTATTTTTT
GTTTTCTTTTTTTTTTTTTTCTTTTCTTTTGTGAGGAAGGTTGCAAGGGT
AGAGGGTTGATATGAAGGTCCTGGGAGATGAATGGGGTTCCAGTGCATGA
TGTGAAATTCACAAGAATCAATACATTTTATTTTAATTAAAAAAGGAAAG
CCGGGCAGTGGTGGTGCACACCTTTAATGCCAGCACTTGGGAGGCAGAGG
CAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGCTCCA
GGACTGTCTTTCAAGACAGAAACCTTGTCTCGAATAAACAAAAACAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_n05.b1 MSMg01no529_n05.b1 CHROMAT_FILE:
MSMg01no529_n05.b1 PHD_FILE: MSMg01no529_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:56 2005
         (560 letters)



>mm_chr5_33537027_33537986
          Length = 960

 Score =  567 bits (293), Expect = e-165
 Identities = 526/733 (71%), Gaps = 201/733 (27%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttccctctcctagtccaagaatagagtttggaatgtattaggcctataatctat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33  gaattcttccctctcctagtccaagaatagagtttggaatgtattaggcctataatctat 92

                                                                       
Query: 65  agttgttgaaatcttaacagattgggaaaaaattcttatcttctaggaggcggtgttttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  agttgttgaaatcttaacagattgggaaaaaattcttatcttctaggaggcggtgttttg 152

                                                                       
Query: 125 gtcaattgtaatttttt------------ttttttttttgccttagagctagaggcttcc 172
           |||||||||||||||||            |||||||||||||||||||||||||||||||
Sbjct: 153 gtcaattgtaattttttatctttttatttttttttttttgccttagagctagaggcttcc 212

                                                                       
Query: 173 tgtgtttcctaggctgtgttgagttcaagggctcaaaccattcacctacctcagacctct 232
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tgtgtttcctagcctgtgttgagttcaagggctcaaaccattcacctacctcagacctct 272

                                                                       
Query: 233 gtgaatctgaatgctgtatgcccaactcaggag--------------------------- 265
           |||||||||||||||||||||||||||||||||                           
Sbjct: 273 gtgaatctgaatgctgtatgcccaactcaggagtaggaagggctgtatgaacagacaggg 332

                                                                       
Query: 265 ------------------------------------------------------------ 265
                                                                       
Sbjct: 333 gctgccgccttgctcaggacagtgtctaccagaatgagagaagggagaaggcagtccagc 392

                                                                       
Query: 265 ------------------------------------------------------------ 265
                                                                       
Sbjct: 393 aaactatcctgcttcagtgtggacacagttctcacaaagcagatggagcctcatgcatca 452

                                                                       
Query: 266 -------ctgtg------cattttgcagagctattttcttttgtcttttgaaaacaataa 312
                  |||||      ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 453 cgatagcctgtgtgatagcattttgcagagctattctcttttgtcttttgaaaacaataa 512

                                                                       
Query: 313 actggttttgattttcttt-agcccaagtggaatgttaatctgattaaataagtgttgga 371
           |||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 513 actggttttgattt-cttttaacccaagtggaatgttaatctgattaaataagtgttgga 571

                                                                       
Query: 372 gatgttttagggcagttcattcctgggaaagaacaggagagaaggaggctttgataaagc 431
           |||||||||||                     ||||||||||||||||||||||||||||
Sbjct: 572 gatgttttagg---------------------acaggagagaaggaggctttgataaagc 610

                                                                       
Query: 432 aagaagcacaagagatagtggattgagaagaagtgactattgcaatgtgagttggggaaa 491
           ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 611 aagaagcacaagagatagtggattgaggagaagtgactattgcgatgtgagttggggaaa 670

                                                                       
Query: 492 tggtcccagtgc------tggctatgctgcaagtgtcatgtgtgtatgtcaagtgtgctt 545
           ||||||||||||      ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 671 tggtcccagtgccactgctggctatgctgcaagtgtcatatgtgtatgtcaagtgtgctt 730

                        
Query: 546 agactgtggagac 558
           |||||||||||||
Sbjct: 731 agactgtggagac 743


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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