BAC Information

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BAC

Clone NameMSMg01-529N10
Chromosome5 (Build37)
Map Location 115,944,580 - 116,114,100
singlet/doubletdoublet
Overlap genePxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64
Upstream geneBC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021
Downstream geneLOC665032, Cit, Prkab1, LOC545798, Ccdc60, 4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943, Gm1684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529N10.T7 (MSMg01no529_n10.b1)MSMg01-529N10.TJ (MSMg01no529_n10.g1)
ACCAG598623AG598624
length744744
length of high quality
(start - end)		650 (50 - 699)643 (81 - 723)
definitionCHROMAT_FILE: MSMg01no529_n10.b1 PHD_FILE: MSMg01no529_n10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:57 2005CHROMAT_FILE: MSMg01no529_n10.g1 PHD_FILE: MSMg01no529_n10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,113,455 - 116,114,100)(115,944,580 - 115,945,233)
sequence
TTTTACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCAAGTACTGGAGTTGTTTGTGCTGTTGAGTTTCTCAGAGC
TGGGTCTTGCTGACTGGATCCCCCATACAGCCTGCTCTGTGTCCCTCCTG
CCTCTGTTTTTCTGCGAGTTGTTGGCCAGTCTAGCTGCAGGGTCCAGTTG
TGGCCAGTGCTTGCCGTGGTGTGGCTCAGCAGCCCAGCCTGTGCTTTCTT
CCCCACAGCTGCACCAAAGCCAGCTGGAGCTCCAGGAGGTGCGGCTGTCC
TACCGGCAGCTGCAGGGCAAGGTGGAGGAACTCACGGAGGAGAGGAGTTT
GCAGAGCTCGGCCGCGACCAGCACGTCCCTGCTATCAGAGATCGAGCAGA
GCATGGAGGCCGAGGAGCTGGAGCAGGAGAGAGAGCAGGTGCTCATATCC
CCACCGGCTGGCAGAAGTGGGCCCTAGGTTCTCTTCACCCTCTTCAGCAC
CGTACTGCCCCCCTGGCATGAGTTCCGATGGCCACAGGCTGGAGTGAGAC
TCACTTACTGGTCAGCCGCTAAAACCTTGAGCAGAACAGCCAGAGCGCAG
TGTCCTTCTCAGTCTCTCCCCCTGGGCCTCTGAGGTGATCCAGAGCCATC
GCTCCTGTGCCATTTGCCTCTTTATGCCCCCATCGCCTCTCCTTCCCACC
CAGGCTCTGACTCCAGCCCGTACAGCTACTCGTATGTGACAGAA

NNCCACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGGACAAAGAGAACAAGG
TGGATTCTAGCAGGGTTTTAGCATCTGCGGAGCCAGGAGTCTTTGGCTCG
GGGAGGAGATATGTTCCTCTGTGCTGGGCTCGAGCTTAGGGAGAGAGTGC
AATCTTTCTATGTCCTAGGTTCTGGATTCAGATCCAGGCACCACCTGAGA
CTGGAGGTGAGATAGAAGTCAGGTAAGGGAGGAGGTATGGGCTTCCCTCC
AGTCTTCTGCTGAGGTCAGAGGTCATTGAGAGTTCCTGCCACTCTTCTGG
AAGCACAACAGTGATAGAGACCAGGGTTTTGAGGGGAGCCACGTCCTTTC
CAGGTGTCTCCCTGGACTCTAGCCTGGCCTTCTCACTTGTCAGCTCCATG
GCTGTGGGCAGGTGACTTCACTTATGAGCCTCAGTTTCCCAGTATATAAA
CTAGGTGTGAACTGGATACGAAAGCCCATACCTGTGGGAGACACAGAGGT
CCTTGGGCTCACAGTTAATCACTAGGGGAACCTGGAATGTTAAAAACACA
GGCTTGGGGGGTGGGGTAGAGAGATGGCTCAGTGGGTTAAGAGCACTGGC
TGCTCTTCTAGAGAACCCAGGTTCAATTCCCAGCACCCACATGGGAGCAA
ACAACTCTCTGTAAGTCTAACATTGTCACACAGACATGTAGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_n10.b1 MSMg01no529_n10.b1 CHROMAT_FILE:
MSMg01no529_n10.b1 PHD_FILE: MSMg01no529_n10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:57 2005
         (650 letters)



>mm_chr5_116113251_116114300
          Length = 1050

 Score = 1218 bits (630), Expect = 0.0
 Identities = 642/646 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcaagtactggagttgtttgtgctgttgagtttctcagagctgggtcttgctga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 gaattctcaagtactggagttgtttgtgctgttgagtttctcagagctgggtcttgctga 791

                                                                       
Query: 65  ctggatcccccatacagcctgctctgtgtccctcctgcctctgtttttctgcgagttgtt 124
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 790 ctggatcccccatacagcctgctccgtgtccctcctgcctctgtttttctgcgagttgtt 731

                                                                       
Query: 125 ggccagtctagctgcagggtccagttgtggccagtgcttgccgtggtgtggctcagcagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ggccagtctagctgcagggtccagttgtggccagtgcttgccgtggtgtggctcagcagc 671

                                                                       
Query: 185 ccagcctgtgctttcttccccacagctgcaccaaagccagctggagctccaggaggtgcg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ccagcctgtgctttcttccccacagctgcaccaaagccagctggagctccaggaggtgcg 611

                                                                       
Query: 245 gctgtcctaccggcagctgcagggcaaggtggaggaactcacggaggagaggagtttgca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gctgtcctaccggcagctgcagggcaaggtggaggaactcacggaggagaggagtttgca 551

                                                                       
Query: 305 gagctcggccgcgaccagcacgtccctgctatcagagatcgagcagagcatggaggccga 364
           ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 550 gagctcggctgcgaccagcacgtccctgctgtcagagatcgagcagagcatggaggccga 491

                                                                       
Query: 365 ggagctggagcaggagagagagcaggtgctcatatccccaccggctggcagaagtgggcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ggagctggagcaggagagagagcaggtgctcatatccccaccggctggcagaagtgggcc 431

                                                                       
Query: 425 ctaggttctcttcaccctcttcagcaccgtactgcccccctggcatgagttccgatggcc 484
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ctaggtgctcttcaccctcttcagcaccgtactgcccccctggcatgagttccgatggcc 371

                                                                       
Query: 485 acaggctggagtgagactcacttactggtcagccgctaaaaccttgagcagaacagccag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 acaggctggagtgagactcacttactggtcagccgctaaaaccttgagcagaacagccag 311

                                                                       
Query: 545 agcgcagtgtccttctcagtctctccccctgggcctctgaggtgatccagagccatcgct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 agcgcagtgtccttctcagtctctccccctgggcctctgaggtgatccagagccatcgct 251

                                                         
Query: 605 cctgtgccatttgcctctttatgcccccatcgcctctccttcccac 650
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 cctgtgccatttgcctctttatgcccccatcgcctctccttcccac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no529_n10.g1 MSMg01no529_n10.g1 CHROMAT_FILE:
MSMg01no529_n10.g1 PHD_FILE: MSMg01no529_n10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:57 2005
         (643 letters)



>mm_chr5_115944380_115945422
          Length = 1043

 Score = 1141 bits (590), Expect = 0.0
 Identities = 634/656 (96%), Gaps = 15/656 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaggacaaagagaacaaggtggattctagcagggttttagcatctgcggagccaggagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 201 ccaggacaaagagaacaaggtggattctagcagggttttagcatctgtggagccaggaat 260

                                                                       
Query: 61  ctttggctcggggaggagatatgttcctctgtgctgggctcgagcttagggagagagtgc 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttgcctcggggaggagatatgttcctctgtgctgggctcgagcttagggagagagtgc 320

                                                                       
Query: 121 aatctttctatgtcctaggttctggattcagatccaggcaccacctgagactggaggtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatctttctatgtcctaggttctggattcagatccaggcaccacctgagactggaggtga 380

                                                                       
Query: 181 gatagaagtcaggtaagggaggaggtatgggcttccctccagtcttctgctgaggtcaga 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 gatagaagtcaggtaagggaggaggcatgggcttccctccagtcttctgctgaggtcaga 440

                                                                       
Query: 241 ggtcattgagagttcctgccactcttctggaagcacaacagtgatagagaccagggtttt 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 ggtcattgagagttcctgccactcttctggaagcacaaccgtgatagagaccagggtttt 500

                                                                       
Query: 301 gaggggagccacgtcctttccaggtgtctccc------------tggactctagcctggc 348
           ||||||||||||||||||||||||||||||||            ||||||||||||||||
Sbjct: 501 gaggggagccacgtcctttccaggtgtctcccgtgagacagccctggactctagcctggc 560

                                                                       
Query: 349 cttctcacttgtcagctccatggctgtgggcaggtgacttcacttatgagcctcagtttc 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttctcacttgtcagctccatggctgtgggcaggtgacttcacttatgagcctcagtttc 620

                                                                       
Query: 409 ccagtatataaactaggtgtgaactggatacgaa-agcccatacctgtgggagacacaga 467
           ||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct: 621 ccagtatataaactaggtgtgaactggatac-aatagccc-tacctgtgggagacacaga 678

                                                                       
Query: 468 ggtccttgggctcacagttaatcactaggggaacctggaatgttaaaaacacaggcttgg 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ggtccttgggctcacagttaatcactaggggaacctggaatgttaaaaacacaggcttgg 738

                                                                       
Query: 528 ggggtggggtagagagatggctcagtgggttaagagcactggctgctcttctagagaacc 587
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 739 ggggtggggtagagagatggctcagtgggttaagagcactggctgctcttctagaggacc 798

                                                                   
Query: 588 caggttcaattcccagcacccacatgggagcaaacaactctctgtaagtctaacat 643
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 799 caggttcaattcccagcacccacatgggagcaaacagctctctgtaagtctaacat 854


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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