Query= MSMg01no530_b12.b1 MSMg01no530_b12.b1 CHROMAT_FILE:
MSMg01no530_b12.b1 PHD_FILE: MSMg01no530_b12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:17 2005
(691 letters)
>mm_chr5_59890917_59892007
Length = 1091
Score = 1224 bits (633), Expect = 0.0
Identities = 673/687 (97%), Gaps = 2/687 (0%)
Strand = Plus / Plus
Query: 5 gaattctcagctccttctccagcactctctaccaggatcctgtcaagcttcctactttga 64
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 207 gaattctcagctccttctccagcactctctaccacgatgctgtcaagcttcctactttga 266
Query: 65 tgataatggatagaacttctgaatctataagccaggtccaaacaaaaatttgcccttata 124
||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 267 tgataatggattgaacttctgaatctataagccaggtccaaacaaaaaattgccc--ata 324
Query: 125 taagagttgttttggtcattatgtcccttcacagcagtaaaaccctaatgaaaatactta 184
|| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 325 tatgagttgttttggtcattgtgtcccttcacagcagtaaaaccctattgaaaatactta 384
Query: 185 ccatatattttaatgaacacactatcctttgggatttcccaccctctgaaatctgaagaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccatatattttaatgaacacactatcctttgggatttcccaccctctgaaatctgaagaa 444
Query: 245 ataggtcctttgttttattcatgctccctggggtattttgttattttagctaaagttgct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 445 ataggtcctttgttttattcatgctccctggggtattttgttattttagctaacgttgct 504
Query: 305 gatatcagcatagtcaatatgttccaagtctctattttcctgtaaaataacttagaccct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gatatcagcatagtcaatatgttccaagtctctattttcctgtaaaataacttagaccct 564
Query: 365 caatattcttcatcactgtatattgaacatccattcctctctgaatgcttcaaagggtca 424
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caatattcttcataactgtatattgaacatccattcctctctgaatgcttcaaagggtca 624
Query: 425 caaaaaaatgagaagtgctagtttctcaagtctttacatcttaaataaatatactgaaat 484
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaaaaaaacgagaagtgctagtttctcaagtctttacatcttaaataaatatactgaaat 684
Query: 485 acagcacatgtttttccctgttgagaaggtttgtattatattatctctttccttgaatgg 544
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 685 acagcacatgtttttccctgttgagaaggtttgtattatatcatctctttccttgaatgg 744
Query: 545 aagttccaagtgattaaatgaaaattgaaaacaggctttcatcacagaccactgcacagg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aagttccaagtgattaaatgaaaattgaaaacaggctttcatcacagaccactgcacagg 804
Query: 605 attgagcaagttccaataactttggacagatatcatcatacagttggtacaattaaaaaa 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 attgagcaagttccaataactttggacagatatcatcatacagttggtacaattaaaaaa 864
Query: 665 gtactgacagatgtacagtaaaaaggt 691
|||||||||||||||||||||||||||
Sbjct: 865 gtactgacagatgtacagtaaaaaggt 891
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space: 736161
Effective search space used: 736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no530_b12.g1 MSMg01no530_b12.g1 CHROMAT_FILE:
MSMg01no530_b12.g1 PHD_FILE: MSMg01no530_b12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:17 2005
(661 letters)
>mm_chr5_59943126_59944186
Length = 1061
Score = 1125 bits (582), Expect = 0.0
Identities = 617/634 (97%), Gaps = 11/634 (1%)
Strand = Plus / Minus
Query: 1 tgtgatttgggttccttgaatctaataaattattaactatctgaatttttatttatttat 60
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 623 tgtgatttgggctccttgaatctaataaattattaactatctgaatctttatttatttat 564
Query: 61 ttttaatttgtatggttatgtgactgtgtaagtgtatactatctacttctagatgcatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttttaatttgtatggttatgtgactgtgtaagtgtatactatctacttctagatgcatgt 504
Query: 121 gtatgctagaagaggatgttagatcccaacagagagccataaagaggcttacctgaatga 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gtatgctagaacaggatgttagatcccaacagagagccataaagaggcttacctgaatga 444
Query: 181 agggaatgaaacttttgttcctaattgttcagccatctggctagtctccaacatcaggat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgggaatgaaacttttgttcctaattgttcagccatctggctagtctccaacatcaggat 384
Query: 241 tttaatcctcagtccttgtctgagggaatgtttcaattgagaagaaattgcttgtagcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tttaatcctcagtccttgtctgagggaatgtttcaattgagaagaaattgcttgtagcat 324
Query: 301 tgagctgtgcctagcactgctattgacaatattcagtgctcaaataaaatgtcaaaaaac 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgagctgtgcctagcactgctattgacaatattcagtgctcaaataaaatgtcaaaaaa- 265
Query: 361 aaaaacaaaaacaaaaacaaaaacaaaaaatcaaataaaatgtccttccagagctatgag 420
||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 264 --aaacaaaaaaaaaaac-----caaaaaatcaaataaaatgtccttccagagctatgag 212
Query: 421 ctgagaaataataagcaataaccttacataatgtaatattcgacatttaaagacttaatg 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 ctgagaaataa---gcaataaccttacataatgtaatattcgacatttaaagacttaatg 155
Query: 481 ctaattataaacagctgtgagtatctaaaaagacaataactaggataattcattgttaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 ctaattataaacagctgtgagtatctaaaaagacaataactaggataattcattgttaac 95
Query: 541 cagcataaattatttatgaaaacactctaatgaggttaggattattacctggtttaaatt 600
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 cagcataaattatttatcaaaacactctaatgaggttaggattattacctggtttaaatt 35
Query: 601 ataacgaggacacattccccaaaagcatgtatgt 634
||||||||||||||||||||||||||||||||||
Sbjct: 34 ataacgaggacacattccccaaaagcatgtatgt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
