Query= MSMg01no530_c11.b1 MSMg01no530_c11.b1 CHROMAT_FILE:
MSMg01no530_c11.b1 PHD_FILE: MSMg01no530_c11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:22 2005
(721 letters)
>mm_chr1_9145940_9147060
Length = 1121
Score = 1280 bits (662), Expect = 0.0
Identities = 692/716 (96%), Gaps = 22/716 (3%)
Strand = Plus / Minus
Query: 5 gaattcaagaatattctcagtcgctaagatccattgccatggaatctcatcaggactgaa 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 gaattcaagaatactctcagtcgctaagatccattgccatggaatctcatcaggactgaa 659
Query: 65 gagatgaagggtcatcacaggagaaaagaaagtcctcacatacagattggcattattctg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gagatgaagggtcatcacaggagaaaagaaagtcctcacatacagattggcattattctg 599
Query: 125 actccagttctggtagcagttgttagcaggatgtcagacagctcatcgcatctctgaaat 184
|||| |||||||||||||||||||||||||||| |||||
Sbjct: 598 actc----------------------caggatgtcagacagctcatcgcatctccgaaat 561
Query: 185 ataaggaattaacaaaaactttagacaaagattgaagtatccatgctttggttgacagtc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ataaggaattaacaaaaactttagacaaagattgaagtatccatgctttggttgacagtc 501
Query: 245 aaaatttgttgcagtaatttactactctagaaggaagcaaactagcattctacgttcaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaaatttgttgcagtaatttactactctagaaggaagcaaactagcattctacgttcaaa 441
Query: 305 gaactaaataaatggatgctgaaatttatataatatctattttcattaagtggtttgttg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaactaaataaatggatgctgaaatttatataatatctattttcattaagtggtttgttg 381
Query: 365 cttgcatttgaactataatattgaaacgtaaaaataaaacaaaacaaaaaaccaaaacaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cttgcatttgaactataatattgaaacgtaaaaataaaacaaaacaaaaaaccaaaacaa 321
Query: 425 acaaacaaaaccaaaaaatctctccccttatacgccatgaataaaatagacaataaactt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acaaacaaaaccaaaaaatctctccccttatacgccatgaataaaatagacaataaactt 261
Query: 485 catttggtgttgaaggttaagtttgcttaactgaagatttcttctagcagtcactatcct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 catttggtgttgaaggttaagtttgcttaactgaagatttcttctagcagtcactatcct 201
Query: 545 gttgagttctgaattctggcatgacttcctactcttctttagcctgctttctgatcctca 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gttgagttctgaattctggcatgacttcctactcttctttagcctgctttctgatcctca 141
Query: 605 tgactacttgagtgttatatatatctgtctgatatttttttctgaaaaccacctggtact 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 tgactacttgagtgttatatatatctgtctgatatttttttctgaaaaccacctggtact 81
Query: 665 tgcaagaaaaaagtttctccaggaaagtagacatccacaagacacatttttctatt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 tgcaagaaaaaagtttctccaggaaagtagacatccacaagacacatttttctatt 25
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 721
Length of database: 1121
Length adjustment: 10
Effective length of query: 711
Effective length of database: 1111
Effective search space: 789921
Effective search space used: 789921
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no530_c11.g1 MSMg01no530_c11.g1 CHROMAT_FILE:
MSMg01no530_c11.g1 PHD_FILE: MSMg01no530_c11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:22 2005
(503 letters)
>mm_chr5_4122531_4123433
Length = 903
Score = 774 bits (400), Expect = 0.0
Identities = 482/520 (92%), Gaps = 18/520 (3%)
Strand = Plus / Plus
Query: 1 cccagtgtagggaaattccaaggagggaagactggaatgggtgagtgggtggggg-aaca 59
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 183 cccagtgtagggaaattccaaggagggaagactggaatgggtgggtgggtgggggaaaca 242
Query: 60 ccctcctagaggcaggggaagggggatgggataggggatttctgaaggggagacctgaaa 119
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 243 ccctcatagaggcaggggaagggggatgggataggggatttctgaagggaagacctggaa 302
Query: 120 agggaaaaacaattgaaatgtaaataaagaatatatccaatagaaaaaaaggcataaggg 179
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 303 agggaaaaacacttgaaatgtaaataaagaaaatatccaatagaaaaaaaggcataaggg 362
Query: 180 gaaaaaagaatctatataaaagaagaataaacattaagacaatgcatatttgaagcacta 239
|||||||||| ||||||||| |||||||||| |||||||||||||||||| ||||| |||
Sbjct: 363 gaaaaaagaacctatataaaggaagaataaaaattaagacaatgcatattggaagcgcta 422
Query: 240 caattaagatcaggatttactcatctaaagtgatagtggccaggtgtt------------ 287
||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 423 caattaagatcaggatttactgatctaaagtgatagtggccaggtgttcttaagaacagt 482
Query: 288 -----ttctcgcttgagtaatcaaagagtttaagttgagatgagtcatatctgaagaatg 342
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gagttttcttgcttgagtaatcaaagagtttaagttgagatgagtcatatctgaagaatg 542
Query: 343 atactacctgttttagcacaacaatttatgtcaaatgccattaaacatggactgactata 402
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 543 atactacctgttttagcacaacaatttatgtcaaatgccattaaacattgactgactata 602
Query: 403 gagccttatcatgattggattgtgtatattttagtagcattttaaacaataaaaaacagg 462
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 603 gagccttatcatgattggattgtgtgtattttagtagcattttaaacaataaaaaacagg 662
Query: 463 agagagagggggggagagggagagggagagagagagagag 502
|||||||| | | ||||| ||||| |||||||||||||||
Sbjct: 663 agagagagagagagagagagagagagagagagagagagag 702
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
