Query= MSMg01no530_d16.b1 MSMg01no530_d16.b1 CHROMAT_FILE:
MSMg01no530_d16.b1 PHD_FILE: MSMg01no530_d16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:28 2005
(717 letters)
>mm_chr5_24166971_24168086
Length = 1116
Score = 1089 bits (563), Expect = 0.0
Identities = 578/583 (99%), Gaps = 2/583 (0%)
Strand = Plus / Minus
Query: 5 gaattc-cagaaagaaacacaccacaaaacttctgggggtgctctgttggcttcctgctg 63
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gaattcacagaaagaaacacaccacaaaacttctgggggtgctctgttggcttcctgctg 523
Query: 64 cttccatggactcaggccaattggcagagtgatgtctgttgatacaggctcacgtggtta 123
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 522 cttccatggactcaggccaattggcagagtgatatctgttgatacaggctcacgtggtta 463
Query: 124 ggcaagacaataaaaaagaaaagaaactgagtataaaaaaaaatcataggaagaaatatt 183
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 462 ggcaagacaataaaaaagaaaagaaacggagtat-aaaaaaaatcataggaagaaatatt 404
Query: 184 tagtttgaaagtccttaaggagagagttagagattaaaaagaaaaatattttctgttaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tagtttgaaagtccttaaggagagagttagagattaaaaagaaaaatattttctgttaaa 344
Query: 244 atggaaaacgtgccaggcgtggtggcacacgcctttaatcccagcacttgggaggcagag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 atggaaaacgtgccaggcgtggtggcacacgcctttaatcccagcacttgggaggcagag 284
Query: 304 gcaagcagatttctgagttcgaggccagcctggtctacaaagtgagttccaggacagcca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gcaagcagatttctgagttcgaggccagcctggtctacaaagtgagttccaggacagcca 224
Query: 364 gggctacacagagaaaccctgtctcgaaaacaaaacaaaacaaaaaaaggaaaacgcaat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 gggctacacagagaaaccctgtctcgaaaacaaaacaaaacaaaaaaaggaaaacgcaat 164
Query: 424 ggcacaacacacctggatcccatgtgactttgttccatttaccagcatgtacataataat 483
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 163 ggcacaacacacctggatcccatgtgactttgttccatttgccagcatgtacataataat 104
Query: 484 gattaaaaatttatatatcctctttaagaaagatatcagaatacatcagacttagaggac 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 gattaaaaatttatatatcctctttaagaaagatatcagaatacatcagacttagaggac 44
Query: 544 cgaaaaatggaattctgggttacaagatataaaacagaggtta 586
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43 cgaaaaatggaattctgggttacaagatataaaacagaggtta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 717
Length of database: 1116
Length adjustment: 10
Effective length of query: 707
Effective length of database: 1106
Effective search space: 781942
Effective search space used: 781942
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no530_d16.g1 MSMg01no530_d16.g1 CHROMAT_FILE:
MSMg01no530_d16.g1 PHD_FILE: MSMg01no530_d16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:28 2005
(670 letters)
>mm_chr5_24081873_24082942
Length = 1070
Score = 1272 bits (658), Expect = 0.0
Identities = 667/670 (99%)
Strand = Plus / Plus
Query: 1 gccacttgaattcagtttccttcatcagtaacaagttttaactctatgggtgtgggtgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gccacttgaattcagtttccttcatcagtaacaagttttaactctatgggtgtgggtgtc 260
Query: 61 accaaaaagtttcatggcatataaagacatgtgtctgtgggtgctttactctgtttaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accaaaaagtttcatggcatataaagacatgtgtctgtgggtgctttactctgtttaaaa 320
Query: 121 agatggggatgtgaggacagcctggcctcaaaccttcatctttttaccttagcctcccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatggggatgtgaggacagcctggcctcaaaccttcatctttttaccttagcctcccaa 380
Query: 181 atgctggaattaaaggcctatgcatctgcatccagattctgatcttggcttcgaaaacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgctggaattaaaggcctatgcatctgcatccagattctgatcttggcttcgaaaacca 440
Query: 241 gctcaggaaactcacccaacctacctccatctcctgtggtctctctgccattggcctcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctcaggaaactcacccaacctacctccatctcctgtggtctctctgccattggcctcct 500
Query: 301 cgattttctcttctgccacctgaggttctgtgacagcatctccattttcttcatgtccct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgattttctcttctgccacctgaggttctgtgacagcatctccattttcttcatgtccct 560
Query: 361 ttctgggtcgctgtcgggctttggcagcctccttctttttggctgccttcttcttggcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctgggtcgctgtcgggctttggcagcctccttctttttggctgccttcttcttggcca 620
Query: 421 ggtcggaaggcatggtgatgagccacaggggtagttacagtcctttcaggagtctgaaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtcggaaggcatggtgatgagccacaggggtagttacagtcctttcaggagtctgaaga 680
Query: 481 aaagcaaacagatactccaaaattctaaacttacaggtaagaatgtctgagtgctatccc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaagcaaacagatactccaaaattctaaacttacaggtaagaatgtctgagtgctatccc 740
Query: 541 atccctccttggaattttcctatcaagcctctggtgcccaactcttgtcaccgccaactt 600
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 741 atccctccttggaattttcctatcaagcctgtggtgcccaactcttgtccccgccaactt 800
Query: 601 tgtccgggcttctcacactctctcgaccgctcctccagcctcatctcctcccttggggtt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgtccgggcttctcacactctctcgaccgctcctccagcctcatctcctcccttggggtt 860
Query: 661 cgcacgccaa 670
||| ||||||
Sbjct: 861 cgcgcgccaa 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
