AAAAATTAGTCCTCGTGTCACTATACGACTCACTATATTCAGAGGATGCG
CGGAATTCTCAGCCATCTTCTCCAAGATGTTCTCACCTGGATCATCCCAT
TCCAGACCACCATCTCCAGTGGATCCTTATGCAAAAATGGTTGGTACTCC
TAGACCACCTCCTGGTGGACATAGTTTTCCAAGAAGAAATTCTGTTACAC
CAGTGGAAAACTGTGTGCCTTTATCTTCAGTACCTAGGCCCATTCATATG
AATGAAACATCAGCCACAAGGCCATCCCCAGCCAGAGACTTATGTGCTTC
CTCCATGACAAACAGTGACCCCTATGCAAAGCCTCCAGATACACCTAGGC
CCATGATGACAGATCAGTTTTCAAAACCTTTTAGCCTGCCTAGGTCCCCT
GTGATTTCAGAACAAAGTACAAAAGGTCCTCTAACAACTGGAACCAGTGA
TCACTTTACTAAACCATCTCCTAGAACAGATGCCTTTCAAAGGCAACGGC
TACCTGATCCCTATGCAGGACCGTCATTGACACCTGCCCCATTGGGTAAT
GGCCCTTTTAAGACTCCACTGCACCCTCCTCCATCTCAGGATCCATATGG
ATCTGTGTCACAGACATCAAGACGACTCTCTGTTGACCCTTATGAAAGGC
CTGTCTTGACACCAAGGCCAGTAGATAATTTTTCTCATAGTCAGTCAAAT
GATCCATATAGCCAGCCTCCCCTAACTCCACACCCAGCAATGACTGAATC
T

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAACTTTTCAGCTGGGGAACG
AGAGTACCAGTGAGTATAGCTTTACAAGGTACGCCTGGCCTTGAACTTTC
TAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGAAAATAGCTTTAC
CAGGTACGCCTGGCCTTGAACTTTCTAAGGAAATTCAAGACAGTCTATCA
GAAGTAAAGTGGAAAATAGCTTTATAAGATATGTTTGGCCTTGAACTTTC
TCTAGTGTTAGAAGCCCTTTTGTTCCTTTTCACATGTTATCAAGTGGTTA
AGGCAGGGCGGATTCTAGATGAAGTTCAGGACAATCTATCAGAAGTAAAG
CGGGGAGAGAGAATAGGAGCAAAAAGAAAATATGGTTCACAAAATAAGTA
TACAGGCCTTTCCAAGGGTCTTGAACCCGAGGAAAAGTTTAGGTCAGGTA
AGAATACCTGGGGAGAGATTAGAAGGAAAGAGAAGAGAAAAGAAAAGAAA
AAAGATCAATTAGAGAAGCCAGTTCTTAGTAGTTCTGAATCAGATGAAAA
GGCTATTAGGGCCTGGAAGGCGCTCTCCCGAGCAGGTGAAGCCACTGGAC
AATAATGACAGAGGCAGGCTCTTGCAGCCTACAAGGTCTTATTGTCCACC
CTAGAGTTGTAGATCAAGATTATAAAGGGGAACTTCAGGTTCTCTGTTCT
TGTCCTCAAGNTGTCTTTTCTATATN

Query= MSMg01no530_e19.b1 MSMg01no530_e19.b1 CHROMAT_FILE:
MSMg01no530_e19.b1 PHD_FILE: MSMg01no530_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:34 2005
         (676 letters)



>mm_chr5_24820423_24821498
          Length = 1076

 Score = 1276 bits (660), Expect = 0.0
 Identities = 672/676 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatgttctcacctggatcatcccattccagaccaccatctccagtggatccttatgcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 gatgttctcacctggatcatcccattccagaccaccatctccagtggatccttatgcaaa 817

                                                                       
Query: 61  aatggttggtactcctagaccacctcctggtggacatagttttccaagaagaaattctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 aatggttggtactcctagaccacctcctggtggacatagttttccaagaagaaattctgt 757

                                                                       
Query: 121 tacaccagtggaaaactgtgtgcctttatcttcagtacctaggcccattcatatgaatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 tacaccagtggaaaactgtgtgcctttatcttcagtacctaggcccattcatatgaatga 697

                                                                       
Query: 181 aacatcagccacaaggccatccccagccagagacttatgtgcttcctccatgacaaacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 aacatcagccacaaggccatccccagccagagacttatgtgcttcctccatgacaaacag 637

                                                                       
Query: 241 tgacccctatgcaaagcctccagatacacctaggcccatgatgacagatcagttttcaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tgacccctatgcaaagcctccagatacacctaggcccatgatgacagatcagttttcaaa 577

                                                                       
Query: 301 accttttagcctgcctaggtcccctgtgatttcagaacaaagtacaaaaggtcctctaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 accttttagcctgcctaggtcccctgtgatttcagaacaaagtacaaaaggtcctctaac 517

                                                                       
Query: 361 aactggaaccagtgatcactttactaaaccatctcctagaacagatgcctttcaaaggca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aactggaaccagtgatcactttactaaaccatctcctagaacagatgcctttcaaaggca 457

                                                                       
Query: 421 acggctacctgatccctatgcaggaccgtcattgacacctgccccattgggtaatggccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 456 acggctacctgatccctatgcaggaccgtcattgacacctgccccattgggtaatgggcc 397

                                                                       
Query: 481 ttttaagactccactgcaccctcctccatctcaggatccatatggatctgtgtcacagac 540
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ttttaagaccccactgcaccctcctccatctcaggatccatatggatctgtgtcacagac 337

                                                                       
Query: 541 atcaagacgactctctgttgacccttatgaaaggcctgtcttgacaccaaggccagtaga 600
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 336 atcaagacgactctctgttgacccttatgaaaggcctgccttgacaccaaggccagtaga 277

                                                                       
Query: 601 taatttttctcatagtcagtcaaatgatccatatagccagcctcccctaactccacaccc 660
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 276 taatttttctcatagtcagtcaaatgatccatatagccaccctcccctaactccacaccc 217

                           
Query: 661 agcaatgactgaatct 676
           ||||||||||||||||
Sbjct: 216 agcaatgactgaatct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)