Query= MSMg01no530_o16.b1 MSMg01no530_o16.b1 CHROMAT_FILE:
MSMg01no530_o16.b1 PHD_FILE: MSMg01no530_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:23 2005
(706 letters)
>mm_chr5_24046791_24047894
Length = 1104
Score = 1272 bits (658), Expect = 0.0
Identities = 689/702 (98%), Gaps = 6/702 (0%)
Strand = Plus / Minus
Query: 5 gaattccaggacagttactgctatacagagaaatcctgtctcaaaaaacaaacaaacaaa 64
|||||||||||||| | ||||||||||||||||||||||||||| |||||||||||
Sbjct: 1098 gaattccaggacagccagtgctatacagagaaatcctgtctcaaa----aaacaaacaaa 1043
Query: 65 ggactgactgctcttccagaggatccaagttcagttcccagcaaccacatggtggttcac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1042 ggactgactgctcttccagaggatccaagttcagttcccagcaaccacatggtggttcac 983
Query: 125 aaccatctgtaatgagatccgatgtcctcttctggtgtgtctgaagacagctacagtgta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 aaccatctgtaatgagatccgatgtcctcttctggtgtgtctgaagacagctacagtgta 923
Query: 185 ctcatatacataaaaaaaagtcagtgtgggccagaccaggtgagagcccaaggctagagc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 ctcatatacataaaaaaaagtcagtgtgggccagaccaggtgagagcccaaggctagagc 863
Query: 245 aacccagacccccagacaggcagatgcaagggagctgagcctacaggttcatgtcacctt 304
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 862 aacccagacccccagacaggcagatgcaagggagctgagcctacaggttcacgtcacctt 803
Query: 305 tctctccattcttctgcctcttatccccaccttcctcaacaaaagcagtctcgctctctc 364
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 802 tctctccattcttctgcctcttatccccaccttcctcaacaaaagcagtct--ctctctc 745
Query: 365 ttatagtgctgaaaagccaggaaggcttcctcaatcacttccagcaaagatgcccataca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttatagtgctgaaaagccaggaaggcttcctcaatcacttccagcaaagatgcccataca 685
Query: 425 attatggaggggttgaggtgccttataggagatgctgggggtcatccaggagtgaagctg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 attatggaggggttgaggtgccttataggagatgctgggggtcatccaggagtgaagctg 625
Query: 485 gaacctgagatggggaggggaggccagagctcggggtgggcagggtgtttgtacctggga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaacctgagatggggaggggaggccagagctcggggtgggcagggtgtttgtacctggga 565
Query: 545 tgggaatgggggttcagcacccagtgggcatgggagtgattctgttgctgcctgaggctg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgggaatgggggttcagcacccagtgggcatgggagtgattctgttgctgcctgaggctg 505
Query: 605 gagtcctgctttcctggacagaggttggcttccagagaccccctggggctgcctcctgcc 664
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 504 gagtcctgcttttctggacagaggttggcttccagagaccccctggggctgcctcatgcc 445
Query: 665 aaatctctgatgcttatctctaccagattccatcgggtttag 706
||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 444 aaatctctgatgcttatctctaccagattccttcgggtttag 403
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1104
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1094
Effective search space: 761424
Effective search space used: 761424
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no530_o16.g1 MSMg01no530_o16.g1 CHROMAT_FILE:
MSMg01no530_o16.g1 PHD_FILE: MSMg01no530_o16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:24 2005
(646 letters)
>mm_chr5_23889284_23890326
Length = 1043
Score = 1210 bits (626), Expect = 0.0
Identities = 640/646 (99%), Gaps = 3/646 (0%)
Strand = Plus / Plus
Query: 1 tggcaacagagggcggcatggagctggatgaagccggtgacgtcatcggcgtgctgcggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggcaacagagggcggcatggagctggatgaagccggtgacgtcatcggcgtgctgcggg 260
Query: 61 tgcgaaagggcagacctggccgggctagggtagatctatgctgacagctcctgttcgggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcgaaagggcagacctggccgggctagggtagatctatgctgacagctcctgttcgggt 320
Query: 121 tctaatccattgagttcttttcctcctctcaggatcagcaacgctaccacgaggacattt 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 tctaatccattgagttcttttcctcccctcaggatcagcaacgctaccacgaggacattt 380
Query: 181 tcggactcacattgcgcacccaggaggtgacaagccgcatacgcacccagagcttttctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcggactcacattgcgcacccaggaggtgacaagccgcatacgcacccagagcttttctt 440
Query: 241 tgcaggagcgacagctgaggggcgcagtgccctggtcctttgacccgcctggcccagaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcaggagcgacagctgaggggcgcagtgccctggtcctttgacccgcctggcccagaaa 500
Query: 301 tacctggttcctgacagtcttcctcccctccagttcccggagagagggattgtgtcactt 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 tacctggttcctgacagtcttcctcccctccagttcccggaaagagggattgtgtcactt 560
Query: 361 cgttcggttgaccaaggctagccaccctctctgaagaatgcctacagcactggttgcaag 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 cgttcggttgaccaaggctagccaccctctctgaagaatgcctacagcattggttgcaag 620
Query: 421 gctgccaatttaagatctttcttctctctccagtttacctaggctggggggtgggggggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 gctgccaatttaagatctttcttctctctccagtttacctaggctgggggg---gggggg 677
Query: 481 tcggcctaaatcttgaaggttcctccggctgtggtagttagggcatcctgctgccctctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tcggcctaaatcttgaaggttcctccggctgtggtagttagggcatcctgctgccctctt 737
Query: 541 catatgctttgatggactgtagactccctttaactctctctctggagtatcttacgttta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 catatgctttgatggactgtagactccctttaactctctctctggagtatcttacgttta 797
Query: 601 aagtctaagtcatcccggtatttattgaaaaattatcataaaagac 646
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 aagtctaagtcatcccggtatttattgaaaaattatcataaaagac 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1043
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1033
Effective search space: 656988
Effective search space used: 656988
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
