Query= MSMg01no531_a19.b1 MSMg01no531_a19.b1 CHROMAT_FILE:
MSMg01no531_a19.b1 PHD_FILE: MSMg01no531_a19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:34 2005
(614 letters)
>mm_chr5_53534458_53535471
Length = 1014
Score = 1166 bits (603), Expect = 0.0
Identities = 609/611 (99%), Gaps = 2/611 (0%)
Strand = Plus / Plus
Query: 5 gaattcaatgttcta-ttctatgttacacagggtcctccattcatcagtgggaacaatgg 63
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatgttctagtt-tatgttacacagggtcctccattcatcagtgggaacaatgg 263
Query: 64 ttctcttgtgaaaggcacactcatgttacagttctcaaagcccgctggccgtcttgtttc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttctcttgtgaaaggcacactcatgttacagttctcaaagcccgctggccgtcttgtttc 323
Query: 124 attcagtctgtgatcatgaacaccaccccagaatacataaggttcttcagagctatccac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 attcagtctgtgatcatgaacaccaccccagaatacataaggttcttcagagctatccac 383
Query: 184 atgggtgtaaaggtgggactctaataaccatcctatgtctcctagactctcccctgacct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atgggtgtaaaggtgggactctaataaccatcctatgtctcctagactctcccctgacct 443
Query: 244 tcctccaaagcttttttcaacctggttctttattctccatctttgggaatgttgagatct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcctccaaagcttttttcaacctggttctttattctccatctttgggaatgttgagatct 503
Query: 304 ggcccaaacacgctctgttgaaccagtgacaaacgtgcggcaccgtggggctggtggcca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggcccaaacacgctctgttgaaccagtgacaaacgtgcggcaccgtggggctggtggcca 563
Query: 364 cgtaccaaaccatgaaatatgggtgtcaccttcagaatgtcacagaagtagagagaagcc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cgtaccaaaccatgaaatatgggtgtcaccttcagaatgtcacagaagtagagagaagcc 623
Query: 424 acatgtcaactgtaagattgtcaattaaaaatgtgcccagggaagtgcctctgactcgtc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acatgtcaactgtaagattgtcaattaaaaatgtgcccagggaagtgcctctgactcgtc 683
Query: 484 ccttccagcgggtccctctccatcacaggtgacagccgcttgttctaagactttctgttt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ccttccagcgggtccctctccatcacaggtgacagccgcttgttctaagactttctgttt 743
Query: 544 gcctgcacgcccacaggaaatgtctcaggatgtctattatgagaatcgaacaattttagt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gcctgcacgcccacaggaaatgtctcaggatgtctattatgagaatcgaacaattttagt 803
Query: 604 tcaaattaagt 614
|||||||||||
Sbjct: 804 tcaaattaagt 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_a19.g1 MSMg01no531_a19.g1 CHROMAT_FILE:
MSMg01no531_a19.g1 PHD_FILE: MSMg01no531_a19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:34 2005
(641 letters)
>mm_chr5_53678815_53679855
Length = 1041
Score = 1019 bits (527), Expect = 0.0
Identities = 539/543 (99%)
Strand = Plus / Minus
Query: 99 gccccagtaagtgtcaacactgagctcagatggttttgtcagagatagagggctggtttc 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 gccccagtaagtgtcaacactgagctcagatggttttgtcagagatagagggctggtttc 982
Query: 159 gctcagaggttcagaatactgagagcatcctcagacatcctttactatctccaaggaaca 218
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 981 actcagaggttcagaatactgagagcaccctcagacatcctttactatctccaaggaaca 922
Query: 219 ccgtgcatgctgtggtatggatgtgaaatgcccccttccccggttcatgtgtttgaaaag 278
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 ctgtgcatgctgtggtatggatgtgaaatgcccccttccccggttcatgtgtttgaaaag 862
Query: 279 ttggtcttcaaatagtggtgggacaggaaaaagaagataggcagttctggggttttagtg 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ttggtcttcaaatagtggtgggacaggaaaaagaagataggcagttctggggttttagtg 802
Query: 339 agtggatgattgctggtgttcccaagcaaggctggggtgtttctccgccaactcccatcc 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agtggatgattgctggtgttcccaagcaaggctggggtgtttctccgccaactcccatcc 742
Query: 399 cacttggatttatggcactcctggattagctccccgatgctgctccattgagtacattta 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cacttggatttatggcactcctggattagctccccgatgctgctccattgagtacattta 682
Query: 459 gagagtgggaatgtatcttctttcatctgtgtacctgtccacacagacaaatagcaggac 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagagtgggaatgtatcttctttcatctgtgtacctgtccacacagacaaatagcaggac 622
Query: 519 aatggagccatgggtaggccagcagcagcatctcccagagaaactgcccagaaagcactt 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatggagccatgggtaggccagcagcagcatctcccagagaaactgcccagaaagcactt 562
Query: 579 tgacagtgaaaagcatctcatatattcaccactttacttagctttctatacattgttccc 638
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 tgacagtgaaaagcatctcatatattcaccactctacttagctttctatacattgttccc 502
Query: 639 gtg 641
|||
Sbjct: 501 gtg 499
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
