Query= MSMg01no531_a24.b1 MSMg01no531_a24.b1 CHROMAT_FILE:
MSMg01no531_a24.b1 PHD_FILE: MSMg01no531_a24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:35 2005
(645 letters)
>mm_chr5_25029784_25030829
Length = 1046
Score = 998 bits (516), Expect = 0.0
Identities = 562/580 (96%), Gaps = 8/580 (1%)
Strand = Plus / Minus
Query: 4 ggaattcttttctgtat-acagccacaaatcccagtttggcctgagtcgtga-ctcctga 61
||||||||||||||||| | |||||||||||||||||||||||||||||||| | |||||
Sbjct: 579 ggaattcttttctgtatcaaagccacaaatcccagtttggcctgagtcgtgatc-cctga 521
Query: 62 gagattaaggggcctcttcaggctgttgagagtgaccgtgggaagctgagtttctgtccc 121
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 520 gagattaaggggcctcttcaggctgttgagagtgaccgtggggagctgagtttctgtccc 461
Query: 122 ctcctttctaaggattctaacaagagaatggggatgggggctgctgagcctgtagaatag 181
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ctcctttctaaggattctaacgagagaatggggatgggggctgctgagcctgtagaatag 401
Query: 182 ttctgcttcctgctgtaggagatgactattttcagagtccaagtaactgtataattcacc 241
|||||||||||||||| |||||| ||||||||||||||||| || |||||||||||||||
Sbjct: 400 ttctgcttcctgctgtgggagataactattttcagagtccatgtgactgtataattcacc 341
Query: 242 taaaggactctgtcaccctgctcagtcaacaggctgacaatctacttccagtcactcagt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 taaaggactctgtcaccctgctcagtcaacaggctgacaatctacttccagtcactcagt 281
Query: 302 catcctggcaaacagaagcatgggaacctatttttctagccatcctccatctgagttttt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 catcctggcaaacagaagcatgggaacctatttttctagccatcctccatctgagttttt 221
Query: 362 attctttcctccctccctccttccttctttcttttcctttttctttctttttttattttc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 attctttcctccctccctccttccttctttcttttcctttttctttctttttttattttc 161
Query: 422 ttgctacttttttttaaactacttttaa-----attttatttattattatatgtaagtac 476
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 160 ttgctacttttttttaaactacttttaaattttattttatttattattatatgtaagtac 101
Query: 477 attgtagctgacagaccagaagagggtgtcatatctcactacggatggttgtgagccacc 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 100 attgtagctgacagaccagaagagggtgtcatatctcactacggatggttgtgaaccatc 41
Query: 537 atgtggttgttgggatttgaactcaggacctttggaagag 576
||||||||| ||||||||||||||||||||||||||||||
Sbjct: 40 atgtggttgctgggatttgaactcaggacctttggaagag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1046
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1036
Effective search space: 657860
Effective search space used: 657860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_a24.g1 MSMg01no531_a24.g1 CHROMAT_FILE:
MSMg01no531_a24.g1 PHD_FILE: MSMg01no531_a24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:35 2005
(609 letters)
>mm_chr5_24918568_24919576
Length = 1009
Score = 1178 bits (609), Expect = 0.0
Identities = 609/609 (100%)
Strand = Plus / Plus
Query: 1 agaagttattacagtaagaaggtggtcgaggaggatgctctcacaaaataataactcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaagttattacagtaagaaggtggtcgaggaggatgctctcacaaaataataactcctg 260
Query: 61 tgacagatgacacaaagcgtccaagaactaaggcagaaggtggataaagtgtcttcacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgacagatgacacaaagcgtccaagaactaaggcagaaggtggataaagtgtcttcacaa 320
Query: 121 accatggcagttaaacctgaggacagaccatgccttacagactatcttactgaatcaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accatggcagttaaacctgaggacagaccatgccttacagactatcttactgaatcaaaa 380
Query: 181 gggacctcgaatgctaaatataactaaaaattcacatttaaatagagtagccattaaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggacctcgaatgctaaatataactaaaaattcacatttaaatagagtagccattaaact 440
Query: 241 tagtgaagaccagatatgacttagatttgatactttttacaactaaataagactatggaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagtgaagaccagatatgacttagatttgatactttttacaactaaataagactatggaa 500
Query: 301 agataatgagaaagagaaaggaagtaagaagataattaaagtctcataaagacaacggct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agataatgagaaagagaaaggaagtaagaagataattaaagtctcataaagacaacggct 560
Query: 361 tcaaccaagtaggccaagtcaagaggacaggaaattgtgggttaatcaagtatgaactat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaaccaagtaggccaagtcaagaggacaggaaattgtgggttaatcaagtatgaactat 620
Query: 421 gaagaagatacaaatcacagatcaacccataagcaaccagataaatattggtattatttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaagaagatacaaatcacagatcaacccataagcaaccagataaatattggtattatttg 680
Query: 481 ttgaaaaggagagcagaggaagaggtggaataaagagtagtctgtggccctctaaaaagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgaaaaggagagcagaggaagaggtggaataaagagtagtctgtggccctctaaaaagg 740
Query: 541 tgaatgaggtatctaacacatgtctatatggaaatgttaactgggaagacagcagaattt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgaatgaggtatctaacacatgtctatatggaaatgttaactgggaagacagcagaattt 800
Query: 601 ggattttag 609
|||||||||
Sbjct: 801 ggattttag 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
