BAC Information

Click to search

BAC

Clone NameMSMg01-531E10
Chromosome5 (Build37)
Map Location 135,642,789 - 135,643,170
singlet/doubletsinglet
Overlap genenone
Upstream geneWbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2
Downstream geneBcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531E10.T7 (MSMg01no531_e10.b1)MSMg01-531E10.TJ (MSMg01no531_e10.g1)
ACCAG599717AG599718
length770816
length of high quality
(start - end)
198 (120 - 317)411 (80 - 490)
definitionCHROMAT_FILE: MSMg01no531_e10.b1 PHD_FILE: MSMg01no531_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:51 2005CHROMAT_FILE: MSMg01no531_e10.g1 PHD_FILE: MSMg01no531_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTCTTAAATTTGCGGCGTTAAACGAATCACTTTTCCGAGAGGATCCGC
GGAATTCATTATTTTCCCGAGGGTAGCCTCAAACTACATGCAGTTCTTCT
GCTTCTGAGTCCCAGTGCTGGGATTTCGGGCGTGCACGGTTGCAAGCTCA
GTTTACCTAGAGATTGGGGTGGAAGTCAGGTCCTTGCTGATCATACGACT
CTACCAACTGAACAACAGCCCCAGCCCCAGGCCTTCATTTTCTTTTTTTT
TTTTTTAAGATTTTATTTATTTATTATATATAGGTACACTGTCGCTGTCT
TCAGACACTCCAGAAGAGGGATTCAGATTTTGTTACGGATGGTTGTGAGC
CACCATGTGGTTGCTGGGATTTGAACTCCGGACCTTTGGAAGAGCAGTCG
GGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCCGGTCTTCATTTTCT
TCTGGAGAATTCTGTTCCCATGAAAACACGGAGTGTTCCCAGATCACTGG
TCACTTCTGGGTGGGGCTAGCATGACCCATGGACCTATTATCGGTATTCA
GGATAGGTGTTGCATGGGATGTCATAGCCAGCCTTCCTGATAAGATAAAA
CACTTGTGGGGCCCCCCGTAATGTAGATACCCGGGTGTGATCCCCTAAGT
AAGGGCTCTGTTGTAGGGAAATTTATACCCCTCCCCCCAAATGAATCGAT
TTTCCAACATCCGTACCCTGTAGTTGTTCCTCCTGTATAGCTTGTTTTGT
CTCCTGCTTAAGCCACCTCC
CCTTCTTTCCTTTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAACCGGGGATATGCA
GAGGTTTTCTCTGGGGGGTTGAGGAAGGACAAAAAGAGAAAAGAAAGAGG
GGAGTGAAAAGCAGTGATAACAGACCCAATAGAAGGAGGCGGTGACCCAC
AGCTGACGTCGCATGCCCAGAGGGACTTGTTTGAATCAACTTTGAGGTTT
ACTTGCAGTTCCAGGAAAATCAAGAGTTCAAGGTCATCCTTGACTGCGTT
TAAAGTTTGAGGCCAGTTTAAGGCTGCATGAGACCCCGTCAAAGAAGAGG
GAGAGGAGTGTGTCTCCCAGTGACTGTGTAACCTATCCTGAACTTGGCGA
AGCTTCTGATTCATGACTCTCAGCCTTCCAGCTGAACATGTTTGCTGGGA
AAGGATTCCTAAACAGCTTCTGCAGGGGGCGGGGGGGGGGGGTATGTTTT
TCAACTTTTCCCTTTTGTTCTTTTTATTTTCCCTTTTCCTTTTTTTCCCC
CCCCTTTTTTTTTTCCCTCTCTTCTTTTTTTTTCCCTTCTTTTTTTTTTT
TTTTATCTTCGCTTTGTCCTTACTATCCCTCTTTCCTATACTTTTTTTCT
TTTCTTACCTTTTTTTTCCCCCTCCCCCCCTCTACACTTCCATCTTTGCC
TGTTTTTGCACCCTCCCCCCCCCACCTTTCTTTGTTTTCCACCCCTCCTT
TTGTCTTCTCTCATCCACTTTCTATACCTTTTCTGCTTTGACTCAGTTTT
TGCTATTTGCTCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_e10.g1 MSMg01no531_e10.g1 CHROMAT_FILE:
MSMg01no531_e10.g1 PHD_FILE: MSMg01no531_e10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:51 2005
         (411 letters)



>mm_chr5_135642789_135643599
          Length = 811

 Score =  700 bits (362), Expect = 0.0
 Identities = 377/382 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacaaccggggatatgcagaggttttctctggggggttgaggaaggacaaaaagaga 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 caggacaaccagggatatgcagaggttttctctggggggttgaggaaggacaaaaagaga 323

                                                                       
Query: 61  aaagaaagaggggagtgaaaagcagtgataacagacccaatagaaggaggcggtgaccca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 322 aaagaaagaggggagtgaaaagcagtgataacagacccaatagaaggaggaggtgaccca 263

                                                                       
Query: 121 cagctgacgtcgcatgcccagagggacttgtttgaatcaactttgaggtttacttgcagt 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cagctgacgttgcatgcccagagggacttgtttgaatcaactttgaggtttacttgcagt 203

                                                                       
Query: 181 tccaggaaaatcaagagttcaaggtcatccttgactgcgtttaaagtttgaggccagttt 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tccaggaaaaccaagagttcaaggtcatccttgactgcgtttaaagtttgaggccagttt 143

                                                                       
Query: 241 aaggctgcatgagaccccgtcaaagaagagggagaggagtgtgtctcccagtgactgtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 aaggctgcatgagaccccgtcaaagaagagggagaggagtgtgtctcccagtgactgtgt 83

                                                                       
Query: 301 aacctatcctgaacttggcgaagcttctgattcatgactctcagccttccagctgaacat 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82  aacttatcctgaacttggcgaagcttctgattcatgactctcagccttccagctgaacat 23

                                 
Query: 361 gtttgctgggaaaggattccta 382
           ||||||||||||||||||||||
Sbjct: 22  gtttgctgggaaaggattccta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)