Query= MSMg01no531_g16.b1 MSMg01no531_g16.b1 CHROMAT_FILE:
MSMg01no531_g16.b1 PHD_FILE: MSMg01no531_g16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:02 2005
(397 letters)
>mm_chr5_127552851_127553647
Length = 797
Score = 644 bits (333), Expect = 0.0
Identities = 381/401 (95%), Gaps = 12/401 (2%)
Strand = Plus / Minus
Query: 5 gaattcacagtcttctcccttcaaccaagagagcatagggcaatctgactgaaaaaaaac 64
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 544 gaatt--cagtcttctcccttcaaccaagagagcacagggcaatctgactgaaaaaaaac 487
Query: 65 tcatctaaaattacctccaaggattcacatcagacctcagctgaccggaagtcaggatga 124
||| ||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 486 tcaactaaaattaactctaaggattcacatcagacctcagctgaccagaagtcaggatga 427
Query: 125 gca-agaggagtaccaatgctggccagaggaacatggcatctgccctccatagttactga 183
||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 426 gcaca-aggagtaccaatgctggccagaggaacatggcatctgccctccatagtcactga 368
Query: 184 aatgagtgttaggaggtagagataaaaagggtagtccttgcatccatgatggggtcctga 243
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 367 aatgagtgttaggaggtagagataaaaggggtagtccttgcatccatgatggggtcctga 308
Query: 244 ggagctgctcctctctgagtggaaaaagctcagagtgagtggactgaagagaaattgtga 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 307 ggagctgctcctctctgagtggaaaaagctcagagtgagtggactgaagagaaaatgtga 248
Query: 304 agatggagaaaagagttagggagaataaaagagaaggggaaggaggaagggaggaagaaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 agatggagaaaagagttagggagaataaaagagaaggggaaggaggaagggaggaagaaa 188
Query: 364 aaagagagggagggag----ggag--agaga--gagggagg 396
|||||||||||||||| |||| ||||| ||||||||
Sbjct: 187 aaagagagggagggagagagggaggcagagaaagagggagg 147
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space: 305744
Effective search space used: 305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_g16.g1 MSMg01no531_g16.g1 CHROMAT_FILE:
MSMg01no531_g16.g1 PHD_FILE: MSMg01no531_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:02 2005
(660 letters)
>mm_chr5_127381006_127382065
Length = 1060
Score = 1176 bits (608), Expect = 0.0
Identities = 648/664 (97%), Gaps = 6/664 (0%)
Strand = Plus / Plus
Query: 1 tatcactgggggg----gcgggggtgggcattgaggggttatatccttgcactagttcct 56
||||||||||||| || ||| ||||||||||||||||||||||||| |||||||||
Sbjct: 199 tatcactggggggaggtgcaggg--gggcattgaggggttatatccttgccctagttcct 256
Query: 57 gttcactctctgcttcctgtgtacaaattaaaaggtgatcagctagccttccatttctgc 116
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 257 gctcactctctgcttcctgtgtacaaattaaaaggtgatcagctagccttccattcctgt 316
Query: 117 cttcatactttccttgagggttgccatgcctccttgatgcattgggctcttctcctactg 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cttcatactttccttgagggttgccatgcctccttgatgcattgggctcttctcctactg 376
Query: 177 acacacaagaaaaacatagaaccttttctcctctatgtttcttttggtcatagtatttat 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 acacacaagaaaaacatagaaccttttctcctctatgtttcttttggtcatagtatttat 436
Query: 237 ttcatcacatcagcaggaaagtaactaatacaggtaggagcatttgggtgattttgagaa 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttcatcacatcagcaggaaagtaactaatacaggtaggagcatttgggtgattttgagaa 496
Query: 297 atcttctctttggtattttccatacatgaaagcccttatttagccctgtattcctttcgt 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 497 atcttctctttggtattttccatacatgaaagcccttatttagccctgtattcctttcat 556
Query: 357 agaggtcgttcggaaaaagaacagaaaggtagcagctgtccacattgttgatgctaaagc 416
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agaggtcgttctgaaaaagaacagaaaggtagcagctgtccacattgttgatgctaaagc 616
Query: 417 caagtcagagtagtcccagatgccccatcctccttacttcctttttaggcaatgtctcat 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 caagtcagagtagtcccagatgccccatcctccttacttcctttttaggcaatgtctcat 676
Query: 477 gtttccagactggtttcaaactcaaagccaaggttgaccttggtcttctcatccccctgc 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gtttccagactggtttcaaactcaaagccaaggttgaccttggtcttctcatccccctgc 736
Query: 537 ctccacctactgagtgatgaaattacaggcttgcaccaccatacccagtttccgcggccc 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 737 ctccacctactgagtgatgaaattacaggcttgcaccaccatacccagtttccgaggccc 796
Query: 597 tggtgataaaacaggggacctcgtgcttactaagtaaccattctacttattgagcttcat 656
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 797 tggtgataaaacaggggacctcatgcttattaagtaaccattctacttattgagcttcat 856
Query: 657 tccc 660
||||
Sbjct: 857 tccc 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
