BAC Information

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BAC

Clone NameMSMg01-531H02
Chromosome5 (Build37)
Map Location 14,996,195 - 14,996,869
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1
Downstream geneSpeer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531H02.T7 (MSMg01no531_h02.b1)MSMg01-531H02.TJ (MSMg01no531_h02.g1)
ACCAG599843AG599844
length750758
length of high quality
(start - end)
679 (50 - 728)671 (82 - 752)
definitionCHROMAT_FILE: MSMg01no531_h02.b1 PHD_FILE: MSMg01no531_h02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:04 2005CHROMAT_FILE: MSMg01no531_h02.g1 PHD_FILE: MSMg01no531_h02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:04 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTCTCCTCCGAGCCCCATATTTAATGGGGTTATTTGA
TTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTC
CCGTATCTGATTTGTGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGT
CTTTTTGTCTTATTGACGGTGTCTGTTGCCTTGCAGAAACTTTGGAGTTT
CATTAGGTCCCATTTGTCAATTCTCGATCTTACAACACAAGCCATTGCTG
TTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCC
ACTTTCTCTTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTT
GATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTC
GCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAA
ATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTTCCATGTCGAAGATCAA
GTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATT
GGTCTACTGGTCTGTCTCTATACCAGTACCATGCAGTTTTTATTTCTTTC
TCAGCCTATTTGTCCTTAAGTAGAGGAAGGCTACTGATTTGTTTAAGTTA
ATTTTATATCCAGCCACTTTGCTGAAGTCGTTCATCAGGTTTAGGAGTCN

NNCCGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACATCTTATTTCCATAAAA
CATATATGCTGTAGCATACATACATACATACATACATACATACATACATA
CATACATACATACATATACACATACACACATACACACATACACACACACA
CACACACATACACACATACACACATACACACATACACACATACAATTGGT
TTGTCTGTTTAGTTTTGGATGGGTTTGAGGTGTCGTTGTTGTTGGTTTGT
TTTTGAAACAGAGTCTGTCTATGTAGCCTTGGCTGTCATGGAATTTGCTT
TGTAAACCAGGCTGGCCTCAAATTTAGAGATTCACCTTCTTCTGTCTTCT
AAGACCTAGTAGTCAAGTCTCCACGCCCAGCAGTTTGAATTGTTGGATTA
AAGATTTTGGACATTTGTCTACTTTATCTTTTCTATTAAGATAGAAAGAA
GATAGCCTATTATTCAAAATTACTCGGAAAATTATTTTATAGTCAGTCAT
GGCTGGAATGCAGATATAAAAAAATCAGATTGTTTGGAACTGAAAAAAGA
AAAGATAAAAAGTTTAAGAAACTCTTTAAAAATTTCCCTTTTCAAAACTG
GCTGGCCATTCATACAGCTCATGAATCTTAAGGTTTAACAATATAAGTGA
GTAGCCTCAGCTTATTTCAGTTTGTCTTAAATTTAATTTAGGTTTAATCA
TGTGTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_h02.g1 MSMg01no531_h02.g1 CHROMAT_FILE:
MSMg01no531_h02.g1 PHD_FILE: MSMg01no531_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:04 2005
         (671 letters)



>mm_chr5_14996001_14997069
          Length = 1069

 Score = 1127 bits (583), Expect = 0.0
 Identities = 651/679 (95%), Gaps = 12/679 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatcttatttccataaaacatatatgctgtagcatacatacatacatacatacatacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 195 acatcttatttccataaaacatatatgctgtagcatacatacatacacacatacacacat 254

                                                                       
Query: 61  acatacatacatacatacatacatatacacatacacacatacacacatacacacacacac 120
           ||| ||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 255 acacacatacacacatacacacatacacacatacacacatacacacatacacacacacac 314

                                                                       
Query: 121 acacaca------tacacaca--tacacacatacacacatacacacatacaattggtttg 172
           |||||||      ||||||||  |||||||||||||||||||||||| ||||||||||||
Sbjct: 315 acacacacacacatacacacacatacacacatacacacatacacacaaacaattggtttg 374

                                                                       
Query: 173 tctgtttagttttggatgggtttgaggtgtcgttgttgttggtttgtttttgaaacagag 232
           |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||  
Sbjct: 375 tctgtttagttttggatgggtttgaggtatggttgttgttggtttgtttttgaaacag-- 432

                                                                       
Query: 233 tctgtctatgtagccttggctgtcatggaatttgctttgtaaaccaggctggcctcaaat 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tctgtctatgtagccttggctgtcatggaatttgctttgtaaaccaggctggcctcaaat 492

                                                                       
Query: 293 ttagagattcaccttcttctgtcttctaagacctagtagtcaagtctccacgcccagcag 352
           | |||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 493 tcagagattcactttcttctgtcttctgagacctagtagtcaagtctcctcgcccagcag 552

                                                                       
Query: 353 tttgaattgttggattaaagattttggacatttgtctactttatcttttctattaagata 412
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 553 tttgaattgttggattaaagattttggacatttttctactttatcttttctattaagata 612

                                                                       
Query: 413 gaaagaagatagcctattattcaaaattactcggaaaattattttatagtcagtcatggc 472
           ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 613 gaaagaagatagcctattattcaaatttactcagaaaattattttatagtcagtcatggc 672

                                                                       
Query: 473 tggaatgcagatataaaaaaatcagattgtttggaactgaaaaaagaaaagataaaaagt 532
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 673 tggaatgcagatataaaaaaatcagattgtttggaactgaaaaaa--aaagataaaaagt 730

                                                                       
Query: 533 ttaagaaactctttaaaaatttcccttttcaaaactggctggccattcatacagctcatg 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ttaagaaactctttaaaaatttcccttttcaaaactggctggccattcatacagctcatg 790

                                                                       
Query: 593 aatcttaaggtttaacaatataagtgagtagcctcagcttatttcagtttgtcttaaatt 652
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 aatcttaaggtttaacaatataagtgagtagcctcagcttatttcagtttgtcttaaatt 850

                              
Query: 653 taatttaggtttaatcatg 671
           |||||||||||||||||||
Sbjct: 851 taatttaggtttaatcatg 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1069
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1059
Effective search space:   699999
Effective search space used:   699999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)