Query= MSMg01no531_m12.b1 MSMg01no531_m12.b1 CHROMAT_FILE:
MSMg01no531_m12.b1 PHD_FILE: MSMg01no531_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:31 2005
(463 letters)
>mm_chr5_133179295_133180155
Length = 861
Score = 861 bits (445), Expect = 0.0
Identities = 458/463 (98%), Gaps = 2/463 (0%)
Strand = Plus / Plus
Query: 1 aatttggctgccccagtgttttggatacagatttctgtagtacgtgacataattctccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatttggctgccccagtgttttggatacagatttctgtagtacgtgacataattctccaa 260
Query: 61 ttatcttctcagagacttttgctgtgtccctctcccccctaaaatggtgaatagaagttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatcttctcagagacttttgctgtgtccctctcccccctaaaatggtgaatagaagttt 320
Query: 121 ctctccaaataagtcatcttccgtattttgagtacaacttccaatggcaacagtcacgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctccaaataagtcatcttccgtattttgagtacaacttccaatggcaacagtcacgtg 380
Query: 181 acagtcaccctggcagggctctgaagttttccagagcccttttgtaaaggaactgtgacc 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 acagtcaacctggcagggctctgaagttttccagagcccttttgtaaaggaactgtggcc 440
Query: 241 aatagtagtgtggatccacgctgtggcctgcagcttgtatccctgagtatggctggaccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatagtagtgtggatccacgctgtggcctgcagcttgtatccctgagtatggctggaccc 500
Query: 301 ttagaaatctcccactctgcaatatgattccaaggcttccttattccaaagaactccaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttagaaatctcccactctgcaatatgattccaaggcttccttattccaaagaactccaac 560
Query: 361 ccatggagtgtgcatgcttactgcaaatcaaaatactctgtcactttaatggttttcgta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 ccatggagtgtgcatgcttactgcaaatcaaaatactctgtcactttaatggtttccgta 620
Query: 421 cattttttttttacaagcctcaagtttttgtttttgttgctgt 463
|||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 catttttttt--acaagcctcaagtttttgtttttgttgctgt 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 861
Length adjustment: 10
Effective length of query: 453
Effective length of database: 851
Effective search space: 385503
Effective search space used: 385503
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_m12.g1 MSMg01no531_m12.g1 CHROMAT_FILE:
MSMg01no531_m12.g1 PHD_FILE: MSMg01no531_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:31 2005
(350 letters)
>mm_chr5_133326265_133327012
Length = 748
Score = 634 bits (328), Expect = 0.0
Identities = 344/350 (98%), Gaps = 2/350 (0%)
Strand = Plus / Minus
Query: 1 tgggtttgttttgaaaatagcctattctctgtctaacatcaccactctttttttttttca 60
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 548 tgggtttgttttgaaaatagcctattctctgtctaacatcaccactc--tttttttttca 491
Query: 61 accaatttgctgagtgctagcttctgatgtctgcatgagatgcgtgacaactgcgtgttt 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 accaatttgctgagtgttagcttctgatgtctgcatgagatgcgtgacaactgcgtgttt 431
Query: 121 aagctgggcttgggaaattggtcgaggaggagagtgaacagagaggcctacacttaagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aagctgggcttgggaaattggtcgaggaggagagtgaacagagaggcctacacttaagaa 371
Query: 181 gtgatcagacaaaggatgccgggtgacaatgagctccaatttaaatcaatcactgaactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gtgatcagacaaaggatgccgggtgacaatgagctccaatttaaatcaatcactgaactt 311
Query: 241 agggagagcagcagagggaagaccaggcaattctgcaaagttccaccataaaacctcaca 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 310 agggagagcagcagagggaagaccaggcaattctggaaagttccaccataaaacctcaca 251
Query: 301 agggaatacagtatttcctagatactatacacagctgtatggctgtggag 350
||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 250 agggaatacagtatttcctagatactagacacagctgtaaggctgtggag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 748
Length adjustment: 9
Effective length of query: 341
Effective length of database: 739
Effective search space: 251999
Effective search space used: 251999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
