Query= MSMg01no532_b16.b1 MSMg01no532_b16.b1 CHROMAT_FILE:
MSMg01no532_b16.b1 PHD_FILE: MSMg01no532_b16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:56 2005
(632 letters)
>mm_chr5_41922479_41923510
Length = 1032
Score = 1116 bits (577), Expect = 0.0
Identities = 616/637 (96%), Gaps = 16/637 (2%)
Strand = Plus / Plus
Query: 4 ggaattctcacaaggctaatgacaaaaaaaaaaaaaaaccctgacatttgtctaaaaaag 63
||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 204 ggaattctcacaaggctaatgac-------aaaaaacaccctgacatttgtctaaaaaag 256
Query: 64 tgcagacagggagaaaatgtaaagcccctgaagggacagttgtatgaacttgaggaaggg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tgcagacagggagaaaatgtaaagcccctgaagggacagttgtatgaacttgaggaaggg 316
Query: 124 ggtttaaaaccccagctgtaaaccagagcaaaaggtcaacattagaatctttgggaggca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ggtttaaaaccccagctgtaaaccagagcaaaaggtcaacattagaatctttgggaggca 376
Query: 184 agttcaactacagttgatctatgcacagcccagacacttgcaggaaaaaaaatgtaaata 243
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 377 agttcaactacagttgatctatgcacagcccagacacttgcagg-aaaaaaatgtaaata 435
Query: 244 aatagaacatacaactccatttgttgacctgacagatgaattctctcttttaaaatccct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aatagaacatacaactccatttgttgacctgacagatgaattctctcttttaaaatccct 495
Query: 304 tttgtcattaacacaca-------a-acacacacacacacacacacacacacacacacat 355
||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 496 tttgtcattaacacacacacacacacacacacacacacacacacacacacacacacacat 555
Query: 356 gaaaaggaaaagaaaggaaaaaacacatatatttacacatacacagtacagagtttgaga 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gaaaaggaaaagaaaggaaaaaacacatatatttacacatacacagtacagagtttgaga 615
Query: 416 tacacctcattacaaactatttataactttacaaagtcctttataaagcttatcacaggc 475
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 616 tacacctcattagaaactatttataactttacaaagtcctttataaagcttatcgcaggc 675
Query: 476 tcattcatttgtaaattgattattgtgaaaaggtagcttcactcattattatcgcaatat 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tcattcatttgtaaattgattattgtgaaaaggtagcttcactcattattatcgcaatat 735
Query: 536 taagcacaatgtgacatttcatgtaaacatttccaacataggactggagacaaggttgaa 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 taagcacaatgtgacatttcatgtaaacatttccaacataggactggagacaaggttgaa 795
Query: 596 agcgatgatcttgatatattgaaagatgatggagaca 632
|| |||||||||| |||||||||||||||||||||||
Sbjct: 796 agtgatgatcttggtatattgaaagatgatggagaca 832
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_b16.g1 MSMg01no532_b16.g1 CHROMAT_FILE:
MSMg01no532_b16.g1 PHD_FILE: MSMg01no532_b16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:56 2005
(601 letters)
>mm_chr5_42060204_42061204
Length = 1001
Score = 1123 bits (581), Expect = 0.0
Identities = 598/607 (98%), Gaps = 6/607 (0%)
Strand = Plus / Minus
Query: 1 actatgtagaccaagctggcctcaaactcacagagatctgtctgtg--atatatatatac 58
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 894 actatgtagaccaagctggcctcaaactcacagagatctgtctgtgatatatatatatac 835
Query: 59 atgtacatatatatac----atatatatatataaacaaacacatgcaggtgtacacacat 114
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 atgtacatatatatacatatatatatatatataaacaaacacatgcaggtgtacacacat 775
Query: 115 acatagaaaaataataagtctttttaaaaaagaaaatgaaaaactgagatgctagttttt 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 acatagaaaaataataagtctttttaaaaaagaaaatgaaaaactgagatgctagttttt 715
Query: 175 actattccttccacatttttgctctcatggagtttagaagaatttaaaaaatatttagta 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 actattccttccacatttttgctctcatggagtttagaagaatttaaaaaatatttagta 655
Query: 235 gtattgaaacttactaggtttagattaaaacagttaatatattatggtacaacatggctc 294
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 654 gtattgaaacttactaggtttagattaaaacagttaatacattatggtacaacatggctc 595
Query: 295 ttaagtctttaaaacttttgttattattaactcagaaaaaattatcttttcctctgcctt 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ttaagtctttaaaacttttgttattattaactcagaaaaaattatcttttcctctgcctt 535
Query: 355 cccagtttgtatgaagtaaatatttgagctgcttcatgtattttcagtatttcttaaata 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 cccagtttgtatgaagtaaatatttgagctgcttcatgtattttcagtatttcttaaata 475
Query: 415 atgtttcatggtgattagctccctaggttttacctttttcttcaggattggtacatttta 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 atgtttcatggtgattagctccctaggttttacctttttcttcaggattggtacatttta 415
Query: 475 tgtcatatctattttatattttagtctctcttattctggannatattagaaaaattacat 534
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 414 tgtcatatctattttatattttagtctctcttattctggaaaatattagaaaaattacat 355
Query: 535 ttcaaatttctaagaatttctttcagtattcttatctattcttgcttcattttatttttt 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ttcaaatttctaagaatttctttcagtattcttatctattcttgcttcattttatttttt 295
Query: 595 gatgcag 601
|||||||
Sbjct: 294 gatgcag 288
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
