BAC Information

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BAC

Clone NameMSMg01-532I13
Chromosome5 (Build37)
Map Location 15,564,521 - 15,565,064
singlet/doubletsinglet
Overlap geneCacna2d1
Upstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781
Downstream geneLOC668121, Hgf, EG668131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532I13.T7 (MSMg01no532_i13.b1)MSMg01-532I13.TJ (MSMg01no532_i13.g1)
ACCAG600670AG600671
length740744
length of high quality
(start - end)		548 (76 - 623)661 (82 - 742)
definitionCHROMAT_FILE: MSMg01no532_i13.b1 PHD_FILE: MSMg01no532_i13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:28 2005CHROMAT_FILE: MSMg01no532_i13.g1 PHD_FILE: MSMg01no532_i13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGGGGCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTAAATAATTGCCATGTGAACTCCTAGCTCGTCGAAGC
AGAGAGAGGTGGGTCTTTGTGAGCTTGAGGTTGGCCTGGTCTATGTAGTG
AGTTCCAGGACAGCCAGGGCTAAATAGTGAGACCAGTCTAGTGGGAGTGA
GAAGGGAAGTAGAGGGAAAGAGGAATGGGTGGAAAGAAAAGACTACAATG
ATGTTGTGTGAAAAGGGATTCATATGTTAATTTTTTCTAATTTTGTTTTA
TACTAAAAAATAATTTTCTATATTAAAAAACCTTGATTTTGGTTAGTAAC
CTTACATTTGCTATCAACTTTCAAGTACTTGCTAGTCTTAAGTCCTAAAT
CTACAAGGTAGCCATATAATTGATCTAATCTGTGTTACTATTAACTTGCT
GAACAGTGATGGTTAGAACAAGTACATTTCTTTGTGCTCACCCTGAAGTC
CCCTGTGCAATAACATAGGTTTTAAATCTGCAGATGANAGTTACTAGTAT
AGAAGAGAAAGTCAGATCAGGTGTACTTTAAAAAAGTATAGAGGAGCTCT
ATTAATGACATAGAAGGACTTAGATGGTGTTAGGATGATGCTTAAAAAAA
TAAGCTTTTAAAACCATCTTTTATGCTTCACAGCTCCAAGGGGATTTTAG
GAATTTCAACAATAATTTGTCATTCAAAAGTCAGTTGCAA

NNNCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTT
TATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCCAACG
AGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACA
TTGATGGATTTTCGTATATTAAACCATCCCTGCATTCCTGGAATAAAACC
TACTTGGTCAGGATGGATGATTGCTTTAATGTGATCTTGGATTCGGTTAG
CGAGAATTTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGT
CTGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGT
AATAGTGGCTTCATAAAATGAGTTGGGTAGAGTACTTTCTACTTCTATCT
TGTGAAAAAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCCGA
TAGAACTCTGCACTAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGAG
ACTATTTATAACTGCTTCTATTTCTTTAGGGGATATGGGACTGTTTAGAA
GGTCAACTTGATCCTGATTCAACTTTGGTACCTGGTACCTGTCCAGAAAT
TTGTCCATTTCGTCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTA
GAAGGATCTGATGGTGTTTTGGATTTCTTCAGGATCTGTTGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_i13.b1 MSMg01no532_i13.b1 CHROMAT_FILE:
MSMg01no532_i13.b1 PHD_FILE: MSMg01no532_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:28 2005
         (548 letters)



>mm_chr5_15564317_15565264
          Length = 948

 Score = 1009 bits (522), Expect = 0.0
 Identities = 539/545 (98%), Gaps = 2/545 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaactcctagctcgtcgaagcagagagaggtgggtctttgtgagcttgaggttggcctgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaactcctagctcgtcgaagcagagagaggtgggtctttgtgagcttgaggttggcctgg 264

                                                                       
Query: 65  tctatgtagtgagttccaggacagccagggctaaatagtgagaccag-tctagtgggagt 123
           |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 265 tctatgtagtgagttccaggacagccagggctaaatagtgagac-aggtctagtgggagt 323

                                                                       
Query: 124 gagaagggaagtagagggaaagaggaatgggtggaaagaaaagactacaatgatgttgtg 183
           |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 324 gagaagggaagtggagggaaagaggaatgggtggaaagaaaagaccacaatgatgttgtg 383

                                                                       
Query: 184 tgaaaagggattcatatgttaattttttctaattttgttttatactaaaaaataattttc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgaaaagggattcatatgttaattttttctaattttgttttatactaaaaaataattttc 443

                                                                       
Query: 244 tatattaaaaaaccttgattttggttagtaaccttacatttgctatcaactttcaagtac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tatattaaaaaaccttgattttggttagtaaccttacatttgctatcaactttcaagtac 503

                                                                       
Query: 304 ttgctagtcttaagtcctaaatctacaaggtagccatataattgatctaatctgtgttac 363
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttgctagtctaaagtcctaaatctacaaggtagccatataattgatctaatctgtgttac 563

                                                                       
Query: 364 tattaacttgctgaacagtgatggttagaacaagtacatttctttgtgctcaccctgaag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tattaacttgctgaacagtgatggttagaacaagtacatttctttgtgctcaccctgaag 623

                                                                       
Query: 424 tcccctgtgcaataacataggttttaaatctgcagatganagttactagtatagaagaga 483
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 624 tcccctgtgcaataacataggttttaaatctgcagatgaaagttactagtatagaagaga 683

                                                                       
Query: 484 aagtcagatcaggtgtactttaaaaaagtatagaggagctctattaatgacatagaagga 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aagtcagatcaggtgtactttaaaaaagtatagaggagctctattaatgacatagaagga 743

                
Query: 544 cttag 548
           |||||
Sbjct: 744 cttag 748


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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