NNNAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATATATGCATAGATAAATGCACAAGCGTATTCAAGTCTAG
TAAAAAAATTAAACAGGTGAATGTACTGGGAAGGAAAGATGGAATAACTG
TCCAACTACATTATTAGCTCATACAAATATATATACTCTAGTAATAAGAT
GCAAGTAGAGAAGTCTATTTTCAGTACTTTTAACCCAATTGCTTAAAGTC
CTCAGAATATTTTAAGAAAGTCAGTCCCAGGGCAAATCAGCAGAATGGAA
TTGCTCACTGAGACATTCTATAAGATTCTTTGGTTTCAAGACAGAGCCAC
TTGCCTTGAATTTTTTTGAACAGGTGAATTCTAGGTCTTATAAAAACTAG
AGAAGCAGTCTCTACATAGTCCATCCTTTCATCTTAGCTCCAAACTTTGT
ATCTGTAACTCCTTTCATGGGTATTTTGTTCCCTATTCTAAGGAGGAATG
AAGTATCCATCCATTGGTCTTCCCTCTTCTTGATTTTCTTGTGTTTCACA
AATTGTATCTTGGGCATTCTAAGTTCCTGAGCTAATAGCCACTTATCAGT
GAATGCATATCTAATGTCTTCTTTTGTGATTGGTAGTCGGCCATCATTGG
GAAGAGAGGCCCCTTGGTATTGCAAACTTTATATGCCCCAGTACAGGGGA
ACGCCAGGGCCAAAAAATGGGAGTGGGGGGGTAGGAGAAAATTAAGGGGG
GAAGGGATTTATATCA

NTTGGGTCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGA
ATGGCAGAGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACT
CTGGAGATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGG
AGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACT
GGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT
AGCCAGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATAC
AGAAGATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAG
AATGAATTTATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCAT
CCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCAC
TGATAAGTGGATATTAGCCCAAAACCTAAGATACCCAAGATATAAGATAC
AATTTCCTAAACACATGAAACTCAAGAAAAATGAAGACTGGAGTGTGGAC
ACTATGCCCCCTCTTAGAAGTGGGAGGCAAN

Query= MSMg01no532_o22.b1 MSMg01no532_o22.b1 CHROMAT_FILE:
MSMg01no532_o22.b1 PHD_FILE: MSMg01no532_o22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:00 2005
         (581 letters)



>mm_chr5_43328388_43329368
          Length = 981

 Score =  996 bits (515), Expect = 0.0
 Identities = 542/551 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatatatgcatagataaatgcacaagcgtattcaagtctagtaaaaaaattaaac 64
           ||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||
Sbjct: 551 gaattcatatatgcatagataaatgcacaagtgtattcacgtctagtaaaaaaactaaac 492

                                                                       
Query: 65  aggtgaatgtactgggaaggaaagatggaataactgtccaactacattattagctcatac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aggtgaatgtactgggaaggaaagatggaataactgtccaactacattattagctcatac 432

                                                                       
Query: 125 aaatatatatactctagtaataagatgcaagtagagaagtctattttcagtacttttaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aaatatatatactctagtaataagatgcaagtagagaagtctattttcagtacttttaac 372

                                                                       
Query: 185 ccaattgcttaaagtcctcagaatattttaagaaagtcagtcccagggcaaatcagcaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ccaattgcttaaagtcctcagaatattttaagaaagtcagtcccagggcaaatcagcaga 312

                                                                       
Query: 245 atggaattgctcactgagacattctataagattctttggtttcaagacagagccacttgc 304
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 atggaattgttcactgagacattctataagattctttggtttcaagacagagccacttgc 252

                                                                       
Query: 305 cttgaatttttttgaacaggtgaattctaggtcttataaaaactagagaagcagtctcta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 251 cttgaatttttttgaacaggtgaattctaggtcttataaaaactagagaagcagtctgtg 192

                                                                       
Query: 365 catagtccatcctttcatcttagctccaaactttgtatctgtaactcctttcatgggtat 424
           ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 191 catagtccatcctttcatcttagcttcaaactttgtctctgtaactcctttcatgggtat 132

                                                                       
Query: 425 tttgttccctattctaaggaggaatgaagtatccatccattggtcttccctcttcttgat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 tttgttccctattctaaggaggaatgaagtatccatccattggtcttccctcttcttgat 72

                                                                       
Query: 485 tttcttgtgtttcacaaattgtatcttgggcattctaagttcctgagctaatagccactt 544
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 71  tttcttgtgtttcacaaattgtatcttgggtattctaagttcctgagctaatagccactt 12

                      
Query: 545 atcagtgaatg 555
           |||||||||||
Sbjct: 11  atcagtgaatg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)