Query= MSMg01no533_a01.b1 MSMg01no533_a01.b1 CHROMAT_FILE:
MSMg01no533_a01.b1 PHD_FILE: MSMg01no533_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:06 2005
(666 letters)
>mm_chr5_60094059_60095123
Length = 1065
Score = 1120 bits (579), Expect = 0.0
Identities = 643/667 (96%), Gaps = 10/667 (1%)
Strand = Plus / Plus
Query: 5 gaattcatgttttcataagttgtagtcttactagatagactctta--gtcagaatatttt 62
||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct: 203 gaattcatgttttcacaaattgtagtcttactagatagactcttacagtcagaatatttt 262
Query: 63 tcctattgttaaaatccagatttcagagacttctctttaatagtcctagctctttaaaca 122
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 263 tcctattgttaaaatccagatttcagagacttctctttaatagtccaagctctttaaaca 322
Query: 123 ttatagtaattttgtcatagtcctctccttgaaaaactgcttcacctgaatctcctctcc 182
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 323 ttatagtaattttgtcatagtcctctccttgaaaacctgcttcacctgaatctcctctcc 382
Query: 183 tgaacctgggtgagaacagagggtaacaaacatacaaaaggctgaagatcattttatatt 242
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgaacctgggtgagagcagagggtaacaaacatacaaaaggctgaagatcattttatatt 442
Query: 243 gacatttcttccccctaaatctttattcctctaatttttaaagtggattttttaaatgta 302
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gacattt-ttccccctaaatctttattcctctaatttttaaagtggattttttaaatgta 501
Query: 303 ttagtctgagtatgggtccgctccacatactgctcacaaatccttcctacttccctgccc 362
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 502 ttagtctgagtatgggtccgctccacatactgctcacagatccttcctacttccctgccc 561
Query: 363 tcccaaatatacaacttttcttattcctcctcctaagaaaacaaacaagcaggtgggcat 422
|| |||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 562 tctcaaatataaaacttttcttattcctcctcgtaagaaaaaaaacaagcaggtgggcat 621
Query: 423 ggtatccaatggatctctgaattcaaatccagcctgatctacagagggtgttataggata 482
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 622 ggtatccaatggatctctgaattcaaatccagcctgatctacagagtgtgttataggata 681
Query: 483 tccactgttacga-atagaaatactatcataaaacaaaacaaaacaaaacaaaacaaaac 541
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tccactgttac-acatagaaatactatcataaaacaaaacaaaacaaaacaaaacaaaac 740
Query: 542 aaaacaaaacaaaacttctggaaaaaaaacccaaaaatacaaaaaaataaagaaaacctt 601
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaaacaaaacaaaactcctggaaaaaaaacccaaaaatacaaaaaaataaagaaaacctt 800
Query: 602 aaacaaacatgcatttacaaacataaaaggaaaaatgagataaaatttttaaaa--aacc 659
||||||||| ||||||||||||||||||| ||||||||||||||||| |||| ||||
Sbjct: 801 aaacaaacaggcatttacaaacataaaagaaaaaatgagataaaatt---aaaacaaacc 857
Query: 660 tataaac 666
|||||||
Sbjct: 858 tataaac 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1065
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1055
Effective search space: 692080
Effective search space used: 692080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_a01.g1 MSMg01no533_a01.g1 CHROMAT_FILE:
MSMg01no533_a01.g1 PHD_FILE: MSMg01no533_a01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:06 2005
(550 letters)
>mm_chr5_60237462_60238413
Length = 952
Score = 971 bits (502), Expect = 0.0
Identities = 539/552 (97%), Gaps = 2/552 (0%)
Strand = Plus / Minus
Query: 1 tctggtatttttattctcacagctacaatattactgaagcagttgaatgctgtgtttatg 60
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 752 tctggtatttttattctcatagctacaatattactgaagcagttgaatgttgtgtttatg 693
Query: 61 gtattaagtacctgcaacgtaatgctttgttgcacaatagtagaaaatcaattcatgtat 120
||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 692 gtattaagtacctataacataatgttttgttgcacaatagtagaaaatcaattcatgtat 633
Query: 121 tttatataaaattatgagaagccattctcctattgacatcaaatctactccaattactgt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 632 tttatataaaattatgagaagccattctcctattgacatcaaatctactccacttactgt 573
Query: 181 taacacctcagtcaaataccggagttcatttcatagacacactttataaaagaaaatatc 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 572 taacacctcagtcaaataccggagttcatttcatagacacactttatgaaagaaaatatc 513
Query: 241 cccaggagtcatgacggagaagtgcaagtgaatccctacattaggttttgagtaagactc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 cccaggagtcatgacggagaagtgcaagtgaatccctacattaggttttgagtaagactc 453
Query: 301 catgggtatctccatagaacagactctactgcacaagcaaaggtgtcatgtatgtg--tt 358
||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||
Sbjct: 452 catgggtatctccatagaacagactctacagtacaagcaaaggtgtcatgtatgtggttt 393
Query: 359 tttttttcctcaaaatatgcaggtcacactcttgtttcgatgagactatcttccctgcac 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttttttcctcaaaatatgcaggtcacactcttgtttcgatgagactatcttccctgcac 333
Query: 419 taatgacatcacagtgaggaagagagaaagtaatcatgcaaagtctctctaccccaagaa 478
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 taatgacatcacactgaggaagagagaaagtaatcatgcaaagtctctctaccccaagaa 273
Query: 479 gaattaaatgggccacctgtatttatctcctctctccccacaaaataccttgaagcgact 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gaattaaatgggccacctgtatttatctcctctctccccacaaaataccttgaagcgact 213
Query: 539 ggatggagagct 550
||||||||||||
Sbjct: 212 ggatggagagct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 952
Length adjustment: 10
Effective length of query: 540
Effective length of database: 942
Effective search space: 508680
Effective search space used: 508680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
