BAC Information

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BAC

Clone NameMSMg01-533B15
Chromosome5 (Build37)
Map Location 12,324,948 - 12,509,645
singlet/doubletdoublet
Overlap geneEG668059, Sema3d, LOC668015
Upstream geneSpeer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144, LOC100041626
Downstream geneLOC100042917, LOC668069, LOC433845, LOC625989, LOC670717, Sema3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533B15.T7 (MSMg01no533_b15.b1)MSMg01-533B15.TJ (MSMg01no533_b15.g1)
ACCAG601103AG601104
length736742
length of high quality
(start - end)		658 (55 - 712)657 (81 - 737)
definitionCHROMAT_FILE: MSMg01no533_b15.b1 PHD_FILE: MSMg01no533_b15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:13 2005CHROMAT_FILE: MSMg01no533_b15.g1 PHD_FILE: MSMg01no533_b15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,324,948 - 12,325,600)(12,508,989 - 12,509,645)
sequence
CCTTATTTTTTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCG
AGGATCCGCGGAATTCTTGATCTGATTTTACCATAAAATCACCAAAGAGC
TGCTGCTGCAACATGACACCTGCATTATAAGACATAGTGAATACCTGACC
TCATTCCTTATCCCTCTATATATACCTGTTCAAAAATCAACTTTATCTAA
CCCACATGCAGCAAAAGTTATAGATTACATTATGTTTCTGTCCAAAATTT
ATATGTGGACCTAAGTTCCTCTGGATTTTGTTGTATAATACTTCATATTT
TTTCTCTTTGCATGTTCTTAATTGTGAGATATTCAACATACTAACCTAAA
AGGGGGAGAAAGAATATGGAACACAAACCTAAATATTAATATGGAATTGT
TTTTACATGTTTAACTCACAATTCCTTTAAAAATTGCTTCTCAGGAGAAA
AGACAAAAGGGAGACTGAGAGATGTAGATTTTTTAACATGTACGTCCTCC
ATTCTTTAAAAATAAGGAGTTTATAAATAAAATATGAAGGAAAAATGAAT
AATGGGGAAAAGGAAAACAAAATTAATATTTTCTTCCATAACCGTATAAA
TAGTTCCTTTATTTTCATACAAGACATATATTATATAATCACAGGTACAG
AGGTAGTTTATCTAATTGAACCTGTAACTTGAAGCTCGCTAGTTCCAGGG
CGCTTACTCTTAACAGTTCTGAGAGCTAACCCCATA

NTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAATGCAAAAGACTGAGAA
GTTGCTGGGGAAGTGGCAGATCATTTGAAAGGTGTCCTATTTTTAATTCT
ACTCAAATAGCAGCAACAATAATAATATTTTAGGCAAAAATTGCATACGT
AGACATCTTTAGGGACATGTCATAATGAGGATTGTCTAGATTGTCTTCTA
ACCAAATTTTTATTTGGGGACATTTGCCATTCCTAAATAGACACATGAAA
TTTTGTACTTTATTTTAAAAGCACAAAAATATTTATATAAGCAGGTATCA
AAGGGGGAAATCTATGAGGTTGCTCTCAAATCAAGTAATTCTAAAACTCA
TTAATTTTTAGTAGATTTTTCTTTGGGGCAAGTTTGGAAATCACTTTACT
GGGTAAACAAGTTGAATTACAGGTTTTGACAAAAGGAATGTTTAAAAAAG
TGTCTTTCCTTTTGTTTATATTGTCACTGCTCAAAAGACACTCAGAGATA
GGAAGATAGCCCCTTGGAAATCTCTGGTTTGGCATTCTCTACTAAAGCCA
CTAATTTTGCTGGGACTGGTAAATGTGATCTGACTGTTTAAATAAACTAT
GTTATTTCCCCCTGTAAATCGACTAAAGTAAGACATTGTGTAAAATAGTC
TTATATTAGCCCTTCATGCAACCACATAAATTCCTTAGAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_b15.b1 MSMg01no533_b15.b1 CHROMAT_FILE:
MSMg01no533_b15.b1 PHD_FILE: MSMg01no533_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:13 2005
         (658 letters)



>mm_chr5_12324743_12325800
          Length = 1058

 Score = 1239 bits (641), Expect = 0.0
 Identities = 650/653 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcttgatctgattttaccataaaatcaccaaagagctgctgctgcaacatgacac 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattcttgatctgattttaccataaaatcaccaaagagctgctgctgcaacatgacac 265

                                                                       
Query: 66  ctgcattataagacatagtgaatacctgacctcattccttatccctctatatatacctgt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ctgcattataagacatagtgaatacctgacctcattccttatccctctatatatacctgt 325

                                                                       
Query: 126 tcaaaaatcaactttatctaacccacatgcagcaaaagttatagattacattatgtttct 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tcaaaaatcaactttatctaacccacatgcagcaaaagttatagattacattatgtttct 385

                                                                       
Query: 186 gtccaaaatttatatgtggacctaagttcctctggattttgttgtataatacttcatatt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 386 gtccaaaatttatatgtggacctaagttcctctggattttgttgtataatacttcatatc 445

                                                                       
Query: 246 ttttctctttgcatgttcttaattgtgagatattcaacatactaacctaaaagggggaga 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttttctctttgcatgttcttaattgtgagatattcaacatactaacctaaaagggggaga 505

                                                                       
Query: 306 aagaatatggaacacaaacctaaatattaatatggaattgtttttacatgtttaactcac 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aagaatatggaacacaaacctaaatattaatatggaattgtttttacatgtttaactcac 565

                                                                       
Query: 366 aattcctttaaaaattgcttctcaggagaaaagacaaaagggagactgagagatgtagat 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aattcctttaaaaattgcttctcaggagaaaagacaaaagggagactgagagatgtagat 625

                                                                       
Query: 426 tttttaacatgtacgtcctccattctttaaaaataaggagtttataaataaaatatgaag 485
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tttttaacatgtatgtcctccattctttaaaaataaggagtttataaataaaatatgaag 685

                                                                       
Query: 486 gaaaaatgaataatggggaaaaggaaaacaaaattaatattttcttccataaccgtataa 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gaaaaatgaataatggggaaaaggaaaacaaaattaatattttcttccataaccgtataa 745

                                                                       
Query: 546 atagttcctttattttcatacaagacatatattatataatcacaggtacagaggtagttt 605
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 746 atagttcctttattttcatacaagatatatattatataatcacaggtacagaggtagttt 805

                                                                
Query: 606 atctaattgaacctgtaacttgaagctcgctagttccagggcgcttactctta 658
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 atctaattgaacctgtaacttgaagctcgctagttccagggcgcttactctta 858


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no533_b15.g1 MSMg01no533_b15.g1 CHROMAT_FILE:
MSMg01no533_b15.g1 PHD_FILE: MSMg01no533_b15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:13 2005
         (657 letters)



>mm_chr5_12508789_12509845
          Length = 1057

 Score = 1247 bits (645), Expect = 0.0
 Identities = 654/657 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaatgcaaaagactgagaagttgctggggaagtggcagatcatttgaaaggtgtcctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 agaatgcaaaagactgagaagttgctggggaagtggcagatcatttgaaaggtgtcctat 798

                                                                       
Query: 61  ttttaattctactcaaatagcagcaacaataataatattttaggcaaaaattgcatacgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ttttaattctactcaaatagcagcaacaataataatattttaggcaaaaattgcatacgt 738

                                                                       
Query: 121 agacatctttagggacatgtcataatgaggattgtctagattgtcttctaaccaaatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 agacatctttagggacatgtcataatgaggattgtctagattgtcttctaaccaaatttt 678

                                                                       
Query: 181 tatttggggacatttgccattcctaaatagacacatgaaattttgtactttattttaaaa 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tatttggggtcatttgccattcctaaatagacacatgaaattttgtactttattttaaaa 618

                                                                       
Query: 241 gcacaaaaatatttatataagcaggtatcaaagggggaaatctatgaggttgctctcaaa 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gcacaagaatatttatataagcaggtatcaaagggggaaatctatgaggttgctctcaaa 558

                                                                       
Query: 301 tcaagtaattctaaaactcattaatttttagtagatttttctttggggcaagtttggaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 557 tcaagtaattctaaaactcattaatttttagtagatttttctttggggcaaatttggaaa 498

                                                                       
Query: 361 tcactttactgggtaaacaagttgaattacaggttttgacaaaaggaatgtttaaaaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tcactttactgggtaaacaagttgaattacaggttttgacaaaaggaatgtttaaaaaag 438

                                                                       
Query: 421 tgtctttccttttgtttatattgtcactgctcaaaagacactcagagataggaagatagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tgtctttccttttgtttatattgtcactgctcaaaagacactcagagataggaagatagc 378

                                                                       
Query: 481 cccttggaaatctctggtttggcattctctactaaagccactaattttgctgggactggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cccttggaaatctctggtttggcattctctactaaagccactaattttgctgggactggt 318

                                                                       
Query: 541 aaatgtgatctgactgtttaaataaactatgttatttccccctgtaaatcgactaaagta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aaatgtgatctgactgtttaaataaactatgttatttccccctgtaaatcgactaaagta 258

                                                                    
Query: 601 agacattgtgtaaaatagtcttatattagcccttcatgcaaccacataaattcctta 657
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 agacattgtgtaaaatagtcttatattagcccttcatgcaaccacataaattcctta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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