CCCTTTTTTTTCTTTTTTTGCTGGCGCTATACGACTCACTATATTTCGAG
GATCCGCGGAATTCCATGCATGTGCATAATAAAATAGAATGGTATACATA
CTGTTTCCCTATCCAACACACCCCTCCCCACTTCATCTCTTCTTTATATT
ATTATTATTTGGAAAATTTGTTATATCCTGTTAGTGCTGCCTACATGTGT
TGAGGTGTGAGACCATCCACTGGAGCATGGAGGAATCCATCAGTGGCCTC
ATCCTCACAGACAAGCAAGCCTTCTTTCTCTAGCATGCCAATAGCTTCTC
TGTAAAGGATGGTGGCTGGGGGGTCATCTCTTACATCATGTGGGAATTTT
GGTTGGCTTGATCTTCTGCAGGTCTGGTGGAGGTAACCACAGGTGCTACG
AGCTCATGAACCCAACAGCCATGCCATATCCAGAAGACGGCATTTCACAG
CATATCCCCTTAATGGGGATGGAGACTTAATGAAGATGCCCAATTCTGAG
CTGACCCGTGGCTTTGCTTAGCATTTTTTGAATAGTTATGTATCTCTGTA
CTGACCACAGTCCACTGTATAAAGAAGCGTCTCCCACGCAGGTTGAGAAC
TGAGAACACCCAGTATTCTATATAGAATCTATATAGAAAGAATCCGACAA
CATGATTATTTAGCATAATAACAACAGCAGGTTCTACCTAAGAGCCCATG
ACCTTCCCAGCCATGGGCGTTTGACCAAGATTTC

TTTTTGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCAGCTCTGAAAATCAA
CAAGAAAAATATAGTGCTAATAGTGCATTGGCACTTTGACCTTCTTGAAT
GTGTTGGCAATATATAATCAAACAAGTATTTACATTTTAGAGACTACGAA
CCCCCAGAAGTATACTGGCATCTGTGGAATTTAGAACTTGGAACTGAACT
GCTGGTGGGCAAGCTTGACCTACTTGCAAAATGTCGCCACTCCTGGTTGT
GCGCCCAGCCTTAGGGAATCATTTTTCAGTAAAACAAAGCCTGTAACTTT
ATTTCCATTTCCAATGCCCTCTGCCACCTGGGAAATAGTGCATGGAAAGC
ACAGAATAATTACAGATGAACACAATTTAGACTAAAACAGAGTCTGTGTG
TTTCATACATCTTTTAGCAAGCATGACTACAGATGCACTGAAATCACGCA
CAGTTCTAGTGAATTTTATAGCTCAACTATAAAACAAAATACTCAAGCCA
TGACTTTGTTCAGTCTGATTGAACCTTCAATTATAATTAAACTCACAATA
CCAAGCTTCATTTACAATCAAGTTAATCTTACTCCACAGAAAGCTAANAT
TTTGACCCTTGTGTGTTAAGTAAACCAAGCACGTTTTTAAAAATGAACCA
ACACAGAAGCCCTCACAGTTACAAGACTGAATTTTATATCTTGTCAGGTA
GTCT

Query= MSMg01no533_d05.g1 MSMg01no533_d05.g1 CHROMAT_FILE:
MSMg01no533_d05.g1 PHD_FILE: MSMg01no533_d05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:21 2005
         (619 letters)



>mm_chr5_103476824_103477843
          Length = 1020

 Score = 1154 bits (597), Expect = 0.0
 Identities = 614/620 (99%), Gaps = 1/620 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgcagctctgaaaatcaacaagaaaaatatagtgctaatagtgcattggcactttgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgcagctctgaaaatcaacaagaaaaatatagtgctaatagtgcattggcactttgac 260

                                                                       
Query: 61  cttcttgaatgtgttggcaatatataatcaaacaagtatttacattttagagactacgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcttgaatgtgttggcaatatataatcaaacaagtatttacattttagagactacgaa 320

                                                                       
Query: 121 cccccagaagtatactggcatctgtggaatttagaacttggaactgaactgctggtgggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccccagaagtatactggcatctgtggaatttagaacttggaactgaactgctggtgggc 380

                                                                       
Query: 181 aagcttgacctacttgcaaaatgtcgccactcctggttgtgcgcccagccttagggaatc 240
            ||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||
Sbjct: 381 gagcttgacctacttgcaaaatgtcgccactcctgactgtgcgcccagacttagggaatc 440

                                                                       
Query: 241 atttttcagtaaaacaaagcctgtaactttatttccatttccaatgccctctgccacctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttttcagtaaaacaaagcctgtaactttatttccatttccaatgccctctgccacctg 500

                                                                       
Query: 301 ggaaatagtgcatggaaagcacagaataattacagatgaacacaatttagactaaaacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaaatagtgcatggaaagcacagaataattacagatgaacacaatttagactaaaacag 560

                                                                       
Query: 361 agtctgtgtgtttcatacatcttttagcaagcatgactacagatgcactgaaatcacgca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtctgtgtgtttcatacatcttttagcaagcatgactacagatgcactgaaatcacgca 620

                                                                       
Query: 421 cagttctagtgaattttatagctcaactataaaacaaaatactcaagccatgactttgtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagttctagtgaattttatagctcaactataaaacaaaatactcaagccatgactttgtt 680

                                                                       
Query: 481 cagtctgattgaaccttcaattataattaaactcacaataccaagcttcatttacaatca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagtctgattgaaccttcaattataattaaactcacaataccaagcttcatttacaatca 740

                                                                       
Query: 541 agttaatcttactccacagaaagctaanattttgacccttgtgtgttaagtaaaccaagc 600
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 741 agttaatcttactccacagaaagctaaaattttgacccttgtgtgttaagtaaaccaagc 800

                               
Query: 601 acgttttt-aaaaatgaacc 619
           |||||||| |||||||||||
Sbjct: 801 acgttttttaaaaatgaacc 820


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1020
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1010
Effective search space:   615090
Effective search space used:   615090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)