BAC Information

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BAC

Clone NameMSMg01-533G14
Chromosome5 (Build37)
Map Location 38,830,250 - 38,830,810
singlet/doubletsinglet
Overlap geneSlc2a9
Upstream geneLOC100040355, LOC100040988, Stk32b, Cytl1, Msx1, Stx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik
Downstream geneWdr1, 4930421P07Rik, 6820424L24Rik, Clnk, LOC384174
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533G14.T7 (MSMg01no533_g14.b1)MSMg01-533G14.TJ (MSMg01no533_g14.g1)
ACCAG601340AG601341
length722751
length of high quality
(start - end)
561 (78 - 638)515 (88 - 602)
definitionCHROMAT_FILE: MSMg01no533_g14.b1 PHD_FILE: MSMg01no533_g14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:37 2005CHROMAT_FILE: MSMg01no533_g14.g1 PHD_FILE: MSMg01no533_g14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTGTTAGATGTAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAG
GATCCGCGGAATTCCATGAGATACCCCAAATATCCCATTGGGAAGCCTCT
CTCTTCATGAATTCTATCTCCACTTGAGCAAGAGAACCCGAACTTACCTG
ACAACATTAAGAATGCACAACATAGGCAGGTAGGATGGCACAGAGGGTAA
AGGTGATTGACACCAAGCCTAATGACCTGTAACCCATGTGGTGGAAAGTG
AGACTCTAATCCTGCAAGCCACCATCTGACTTCCACATACTCACAGTGGC
AGCTTACCTCCAAAATAGATAAAAATAATTTTTAAAGAGGAAAAGTGTAG
AACATTTAGAGCATGTGGTGGTTTGAATACATTTGGCCCCCTTAGATTCA
CGTGTTTGAATGTGTGGCCCTTAGGGAGTGACACTAATAGGAGGTGTGGC
CTTGTTGGAAGAAGTATGTCATTGTGGAGGTGGGCTTTGAGGACTCTCTC
CTAGTGCTCAATGTAGAACTCTCAGCTTCTCCTACACTCAGTGTCTGCCT
ATACTCTGCCATGCTTCCTGTCATGATGATAGTGGACTGAACCTCTGAAA
TTGTAAGCCACCCCAACTAAATGTTTTCCTTTATAAGAGTTGTCTTGGTC
ATGGTGTCTCTTCCCAGCAATTAAATACAAACTAATACGAGCTGATTGGC
GATACTGAGGCTTACAGAGTCT
CCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGGAGAAACTGAAAGTTTGAATC
AGTTAGGGTAGAAAGAAGTTATGAGCCAAAACAGCTGAGTTGACCAGCCA
GCAAGAGTTCAGGAAGAACTAATCAGGGTAAGCTTATTCAGCAGCAAGTA
CCAGGGTTTGAAAACATACTAGGCCTAGATAAGGTTGAATCAAGTCTACA
AGCTTCCAGAACAAGGCCTAGATTAGCAGACTGAGGCAGTAAGCCTCAGA
GATAACAATTACCTGAAGCAAGTAAGAGATGCATTTATAGTAGGGTCACT
GGTATTTCATCAGTGGCCCCACCTATAACTTTGGAAACTCAATCCCTGTT
ATGTCCTGTGTCTGGGCAATTGGTACAGCCTGGGGTTGTTTTTGATGACA
TATTATCAATACCTTCCCCAGGAGCATCTGCCATTTCACTCCTATTTCAT
CATTGACTGTTTCTGGGATTGCAGAATATTATCTAAGTACACCCTGATAA
ATTTATGGTTATGATAGCCACATAAGGTCTTAACTTTCATATTTGACCTG
CTGGTTCCACATACTTTGTGTTATCTGATATAACTTTCCAATTCCTAGTC
ACTGGCTATAAAGCTTTTGAAGTGGTCATTCTGAATTCAAGGGTTTTGTG
AGATGATAGTTACATCAGTTCCTATACCCACAAAAACTTCTATTTTAATA
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_g14.b1 MSMg01no533_g14.b1 CHROMAT_FILE:
MSMg01no533_g14.b1 PHD_FILE: MSMg01no533_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:37 2005
         (561 letters)



>mm_chr5_38830050_38831010
          Length = 961

 Score = 1046 bits (541), Expect = 0.0
 Identities = 556/561 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatatcccattgggaagcctctctcttcatgaattctatctccacttgagcaagagaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatatcccattgggaagcctctctcttcatgaattctatctccacttgagcaagagaac 260

                                                                       
Query: 61  ccgaacttacctgacaacattaagaatgcacaacataggcaggtaggatggcacagaggg 120
           ||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 261 ccgaacttagctgacaacattaagaatgcgcaacataggcatgtaggatggcacagaggg 320

                                                                       
Query: 121 taaaggtgattgacaccaagcctaatgacctgtaacccatgtggtggaaagtgagactct 180
           |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 321 taaaggtgattgacaccaagcctaatgacctggaacccacgtggtggaaagtgagactct 380

                                                                       
Query: 181 aatcctgcaagccaccatctgacttccacatactcacagtggcagcttacctccaaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcctgcaagccaccatctgacttccacatactcacagtggcagcttacctccaaaata 440

                                                                       
Query: 241 gataaaaataatttttaaagaggaaaagtgtagaacatttagagcatgtggtggtttgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gataaaaataatttttaaagaggaaaagtgtagaacatttagagcatgtggtggtttgaa 500

                                                                       
Query: 301 tacatttggcccccttagattcacgtgtttgaatgtgtggcccttagggagtgacactaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacatttggcccccttagattcacgtgtttgaatgtgtggcccttagggagtgacactaa 560

                                                                       
Query: 361 taggaggtgtggccttgttggaagaagtatgtcattgtggaggtgggctttgaggactct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taggaggtgtggccttgttggaagaagtatgtcattgtggaggtgggctttgaggactct 620

                                                                       
Query: 421 ctcctagtgctcaatgtagaactctcagcttctcctacactcagtgtctgcctatactct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcctagtgctcaatgtagaactctcagcttctcctacactcagtgtctgcctatactct 680

                                                                       
Query: 481 gccatgcttcctgtcatgatgatagtggactgaacctctgaaattgtaagccaccccaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gccatgcttcctgtcatgatgatagtggactgaacctctgaaattgtaagccaccccaac 740

                                
Query: 541 taaatgttttcctttataaga 561
           |||||||||||||||||||||
Sbjct: 741 taaatgttttcctttataaga 761


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)