BAC Information

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BAC

Clone NameMSMg01-533N22
Chromosome5 (Build37)
Map Location 22,878,606 - 23,027,754
singlet/doubletdoublet
Overlap gene4930580E04Rik, BC050254, Srpk2
Upstream geneLOC100041982, Orc5l, LOC100042049, LOC668232, LOC100042067, LOC671222, LOC625174, Lhfpl3, EG625219, LOC100042101, LOC100042082
Downstream genePus7, Rint1, 4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533N22.T7 (MSMg01no533_n22.b1)MSMg01-533N22.TJ (MSMg01no533_n22.g1)
ACCAG601690AG601691
length750772
length of high quality
(start - end)		653 (55 - 707)684 (76 - 759)
definitionCHROMAT_FILE: MSMg01no533_n22.b1 PHD_FILE: MSMg01no533_n22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:11 2005CHROMAT_FILE: MSMg01no533_n22.g1 PHD_FILE: MSMg01no533_n22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(23,027,106 - 23,027,754)(22,878,606 - 22,879,288)
sequence
TTTTCTATTTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAGTAAGAATCATTCCTCTGTGGTCTTTGTTTCAGTT
TCTGCCTCTGGGTTCCTGCTTGAGTCCCTTCCCTGATGTCCTTCAGTTGT
GGTATATGATGTGGAAGTATTAGCCAAGTAACCGCTTTCCTCTTCCAAGT
TGGTTTGATCAGTGTTTTATTGCAGCAATAGAAAGCAGTCTAGGGTCTGC
CAGCCCTTGCTCAAAACAGGCCCCTCTTTGCTCTGGCCCTGAGGCACAGG
CCTTGCTTGGCTCTATTGCTTCAGAAGCTTGTTGTTTCTATATTGTTCCT
AGCTGCCTTCCTGACTTCTTCCAAATCACCCTTCCAGCTTGCTGCTAGAG
TTTTAAATCACACTCATTAGATAAATTCCCTTGTTCCTAATTCTTCACAG
CTCTTCTTGGGGCCCAGCAGTCCTTTCTACAGTGGTACATGTGCTTATGG
GCAACAGAACAGTCAAGTGAGGTACTTAAATGAATTATTAGGAAACCTCT
GAAAGTCTAGCTCAATAGGTACCTATATATCCTCCACTTATATTTAGTAT
TAACGTTTTAACATGGTATATGTTTTATATAGAAACTGCATGCCATAGAT
AGTAGGATACTTAAATTTAAGTTAATTTAAAGTAAATATTTAAATAAATA
CTTAAGCATTTATCATCAGAGGAATGAACTAAGGATGATTTTGTTACTCN


CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTCCTCCCCATAAAGACAGTTTTA
TTTGGAACCGGAGGACAGCTAAAGAGCAGAGCCTCTGTGAAAGCAGTACA
CTCTGCGATGCTCTCAGCTGCACTGCAGTGAACATGACCAGCACCTTGTG
TGAGTTCCCACTTTGAGGCTGCTGATCCCTTGGAGTCTGCAAGGGACTTC
ATCAGGTCAACGGGCCAATGAATGTCTACTTTAATAGTTATAGATGAGAA
AGCTCCTAGAATGAAAGAATATGGAAGAGGCTCTTTGTGCCCAAATACTG
GATAATCATAGAAATGATGAAAAACGCCCATGCTAGAATTAGATTCTATA
GGAGAAAAAAGTAAGGTTCTGGGTTTTTTAAAAAAATCAGTCTAGGGCTG
GTGAGATAGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCAG
GAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAACGAG
ATCTGACTCCCTCTTCTGGAGTGTCTGAGGACAGCTACAGTGTACTTACA
TATAATAAATAAATAAATCTTTAAAAAAAAATCAATCTAGTAACAACAGA
GTATGGGATCTTTGTAACATATACTGTTTTCTAACTAATTACCTATTTGA
TTACATTATACAGAACAAATTGTAAACAACATCACCCTATAAATTTCTAT
AAATCCTTTAATAAAGCAGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_n22.b1 MSMg01no533_n22.b1 CHROMAT_FILE:
MSMg01no533_n22.b1 PHD_FILE: MSMg01no533_n22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:11 2005
         (653 letters)



>mm_chr5_23026773_23027825
          Length = 1053

 Score = 1247 bits (645), Expect = 0.0
 Identities = 648/649 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtaagaatcattcctctgtggtctttgtttcagtttctgcctctgggttcctg 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 gaattcagtaagaagcattcctctgtggtctttgtttcagtttctgcctctgggttcctg 923

                                                                       
Query: 65  cttgagtcccttccctgatgtccttcagttgtggtatatgatgtggaagtattagccaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 cttgagtcccttccctgatgtccttcagttgtggtatatgatgtggaagtattagccaag 863

                                                                       
Query: 125 taaccgctttcctcttccaagttggtttgatcagtgttttattgcagcaatagaaagcag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 taaccgctttcctcttccaagttggtttgatcagtgttttattgcagcaatagaaagcag 803

                                                                       
Query: 185 tctagggtctgccagcccttgctcaaaacaggcccctctttgctctggccctgaggcaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tctagggtctgccagcccttgctcaaaacaggcccctctttgctctggccctgaggcaca 743

                                                                       
Query: 245 ggccttgcttggctctattgcttcagaagcttgttgtttctatattgttcctagctgcct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ggccttgcttggctctattgcttcagaagcttgttgtttctatattgttcctagctgcct 683

                                                                       
Query: 305 tcctgacttcttccaaatcacccttccagcttgctgctagagttttaaatcacactcatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tcctgacttcttccaaatcacccttccagcttgctgctagagttttaaatcacactcatt 623

                                                                       
Query: 365 agataaattcccttgttcctaattcttcacagctcttcttggggcccagcagtcctttct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 agataaattcccttgttcctaattcttcacagctcttcttggggcccagcagtcctttct 563

                                                                       
Query: 425 acagtggtacatgtgcttatgggcaacagaacagtcaagtgaggtacttaaatgaattat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 acagtggtacatgtgcttatgggcaacagaacagtcaagtgaggtacttaaatgaattat 503

                                                                       
Query: 485 taggaaacctctgaaagtctagctcaataggtacctatatatcctccacttatatttagt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 taggaaacctctgaaagtctagctcaataggtacctatatatcctccacttatatttagt 443

                                                                       
Query: 545 attaacgttttaacatggtatatgttttatatagaaactgcatgccatagatagtaggat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 attaacgttttaacatggtatatgttttatatagaaactgcatgccatagatagtaggat 383

                                                            
Query: 605 acttaaatttaagttaatttaaagtaaatatttaaataaatacttaagc 653
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 acttaaatttaagttaatttaaagtaaatatttaaataaatacttaagc 334


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no533_n22.g1 MSMg01no533_n22.g1 CHROMAT_FILE:
MSMg01no533_n22.g1 PHD_FILE: MSMg01no533_n22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:11 2005
         (684 letters)



>mm_chr5_22878406_22879489
          Length = 1084

 Score = 1321 bits (683), Expect = 0.0
 Identities = 683/683 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtcctccccataaagacagttttatttggaaccggaggacagctaaagagcagagcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtcctccccataaagacagttttatttggaaccggaggacagctaaagagcagagcctc 260

                                                                       
Query: 61  tgtgaaagcagtacactctgcgatgctctcagctgcactgcagtgaacatgaccagcacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgaaagcagtacactctgcgatgctctcagctgcactgcagtgaacatgaccagcacc 320

                                                                       
Query: 121 ttgtgtgagttcccactttgaggctgctgatcccttggagtctgcaagggacttcatcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtgtgagttcccactttgaggctgctgatcccttggagtctgcaagggacttcatcag 380

                                                                       
Query: 181 gtcaacgggccaatgaatgtctactttaatagttatagatgagaaagctcctagaatgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcaacgggccaatgaatgtctactttaatagttatagatgagaaagctcctagaatgaa 440

                                                                       
Query: 241 agaatatggaagaggctctttgtgcccaaatactggataatcatagaaatgatgaaaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaatatggaagaggctctttgtgcccaaatactggataatcatagaaatgatgaaaaac 500

                                                                       
Query: 301 gcccatgctagaattagattctataggagaaaaaagtaaggttctgggttttttaaaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcccatgctagaattagattctataggagaaaaaagtaaggttctgggttttttaaaaaa 560

                                                                       
Query: 361 atcagtctagggctggtgagatagctcagtgggtaagagcacccgactgctcttccgaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcagtctagggctggtgagatagctcagtgggtaagagcacccgactgctcttccgaag 620

                                                                       
Query: 421 gtcaggagttcaaatcccagcaaccacatggtggctcacaaccatccataacgagatctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcaggagttcaaatcccagcaaccacatggtggctcacaaccatccataacgagatctg 680

                                                                       
Query: 481 actccctcttctggagtgtctgaggacagctacagtgtacttacatataataaataaata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actccctcttctggagtgtctgaggacagctacagtgtacttacatataataaataaata 740

                                                                       
Query: 541 aatctttaaaaaaaaatcaatctagtaacaacagagtatgggatctttgtaacatatact 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatctttaaaaaaaaatcaatctagtaacaacagagtatgggatctttgtaacatatact 800

                                                                       
Query: 601 gttttctaactaattacctatttgattacattatacagaacaaattgtaaacaacatcac 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gttttctaactaattacctatttgattacattatacagaacaaattgtaaacaacatcac 860

                                  
Query: 661 cctataaatttctataaatcctt 683
           |||||||||||||||||||||||
Sbjct: 861 cctataaatttctataaatcctt 883


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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