BAC Information

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BAC

Clone NameMSMg01-533O09
Chromosome5 (Build37)
Map Location 151,888,452 - 151,888,768
singlet/doubletsinglet
Overlap geneStard13
Upstream geneLOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin, LOC100040180, Kl, LOC667510
Downstream geneLOC630708, LOC625175, LOC100042166, EG435877, EG632649, EG632671, Rfc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533O09.T7 (MSMg01no533_o09.b1)MSMg01-533O09.TJ (MSMg01no533_o09.g1)
ACCAG601712AG601713
length765770
length of high quality
(start - end)
47 (83 - 129)317 (221 - 537)
definitionCHROMAT_FILE: MSMg01no533_o09.b1 PHD_FILE: MSMg01no533_o09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:13 2005CHROMAT_FILE: MSMg01no533_o09.g1 PHD_FILE: MSMg01no533_o09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTCGTTTTTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCGA
GGATCCGCGGAATTCATTGGATTACCCCCTTTATGTTGTCTACAGCTTAT
GATGGGAGAAGTATTTGAAACCTTTAATTCCAATTTAACAGCCTAAGTAA
ATATATAAGACAGAATCATGGGGAGGGGGAGATACAGCAGCTAGAAGTCC
TGGCTCAGCCATCTCCTGTCACTTAAACCCTAACGCTTGTCAGCCCTCCC
TGCAACATTCTTCTGCCATCCCACGCTGATGAGACAGGGAAGAGCTTCCC
ACTCGTTCTGTGCCGTCCATTCTTCTGGATTCTTACCCCGATAGCTACAG
ACCGCTAATTGCATNCTGCTCCAAGAAACCTTCGAAAGGCCAGCACGTGA
TGTGCCAAAAGTACATACAGTGTGGCCCCCTCAACCACTGTTTTTTTAAC
TGATTTATGTCCCTATTTGTCCCTGACGTGATGATTGTCCCTCGTTTCTT
CGTTTGATCCCATACTGCCTGCCTCGCTTGGTTGTATCACCTCCCGTTTT
TTCTCTATTTCCTTGTCCCCCTCCTTCATCCATTAAATCTACGTGATCCT
TTTTGTTTTTTCACCCATCACCCTTCCCCCTTCATCCTTTCGCTGTCCCC
CCTTCCCTCTTTTCCGCCCCACTCTTATTTACCCCCGAACCTCGTTGGTT
GTTTTTCTCACCGTGCCGTCCTCCCCCCACTTGCGCTTCTTTTATTTTTC
ACGCAACGTATACTT
CCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGTGTTCAAAACCTAGGGCCAAGGAAA
AAAGCCAGCCTGGGGAAGGTGAAAGTCTGAGTGTATATCAACAAAAACCG
AAGGTGCCTCAAAAGCCAGGGAATTTGCACTCATGAGAGGAGGGTGTAGT
TGATTAAGCATTTAAGAAAGAACAGGTGCTGTAAATCCACACGTTCCTTT
GTATTTATTTACCCATTGTGGGGGCTGGGCGGCACTGAGTGGGCGGAGGG
AGGAGGGTTGAGAGAGTGCATGTATTAAGAGCCAGAAGCTAGTAGTCACC
GAAAGCTCTTTTAGGAAGTCTGAACGCTGTGTGTGGTGATGCTCACCTTC
AATCCCAGGCAGAGATCAGCAGATCTCTGTGAGTCTGAAGCTAGCCTGGT
CTACATAGCAAGTTCTAGGCCAGCTGCAACTGCATAGTAAGATCCTATCT
GAAGAAGGAGGAAGAGGAAGTGGAGGAGGTGGGGGAAGAGGAACATTAGG
TTCTCTCTTCCCTCTTGCTCTGTTTTCACTTTCCCCTCCCTTTTTATTCC
CTTTTTCTCTTTTTCTCCTCTGTTTTTTTTACTCTTTTTTTTTCCCCTTT
TTTTTTTTTTTCTCGCTCTTTACCTTTTTTCCCGCCGCCCTTTTTCTTTT
TTCCCTTCCCCTTTTTTCTCCCCCTTTTTTTCTCTTTTTCTCTCCCTCTC
CCTTTTTCCCTTTCACCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_o09.g1 MSMg01no533_o09.g1 CHROMAT_FILE:
MSMg01no533_o09.g1 PHD_FILE: MSMg01no533_o09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:13 2005
         (317 letters)



>mm_chr5_151888252_151888968
          Length = 717

 Score =  551 bits (285), Expect = e-161
 Identities = 309/317 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaggtgctgtaaatccacacgttcctttgtatttatttacccattgtgggggctgggc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 201 aacaggtgctgtaaatccacacgttcctttgtatttatttacccattgtgggggccaggc 260

                                                                       
Query: 61  ggcactgagtgggcggagggaggagggttgagagagtgcatgtattaagagccagaagct 120
           |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 261 ggcactgagtgggcggagggaggagggttgagagagtgcaggtactaagagccagaagct 320

                                                                       
Query: 121 agtagtcaccgaaagctcttttaggaagtctgaacgctgtgtgtggtgatgctcaccttc 180
           ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 agtagtcaccgaaagctctcttaggaagtccgaacgctgtgtgtggtgatgctcaccttc 380

                                                                       
Query: 181 aatcccaggcagagatcagcagatctctgtgagtctgaagctagcctggtctacatagca 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcccaggcagagaccagcagatctctgtgagtctgaagctagcctggtctacatagca 440

                                                                       
Query: 241 agttctaggccagctgcaactgcatagtaagatcctatctgaagaaggaggaagaggaag 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 agttctaggccagctgcaactgcatagtaagatcctatctgaagaaggagaaagaggaag 500

                            
Query: 301 tggaggaggtgggggaa 317
           |||||||||||||||||
Sbjct: 501 tggaggaggtgggggaa 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)