BAC Information

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BAC

Clone NameMSMg01-534E20
Chromosome5 (Build37)
Map Location 146,694,374 - 146,695,004
singlet/doubletsinglet
Overlap genenone
Upstream geneSmurf1, AW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116, Zfp655, LOC677270, EG666311, EG622127, LOC100039566, Cyp3a16, LOC100041375, LOC667065, Cyp3a41, Cyp3a44, Cyp3a11
Downstream geneCyp3a25, LOC667098, LOC667104, LOC100041449, LOC433961, EG622306, 1700001J03Rik, LOC667121, Rnf6, Cdk8, Wasf3, LOC623198, LOC622924, 4930449I24Rik, LOC100041548, LOC100041554, LOC100041566, LOC100041578, EG667172, Gpr12, Usp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534E20.T7 (MSMg01no534_e20.b1)MSMg01-534E20.TJ (MSMg01no534_e20.g1)
ACCAG602019AG602020
length767768
length of high quality
(start - end)		632 (36 - 667)632 (65 - 696)
definitionCHROMAT_FILE: MSMg01no534_e20.b1 PHD_FILE: MSMg01no534_e20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:46 2005CHROMAT_FILE: MSMg01no534_e20.g1 PHD_FILE: MSMg01no534_e20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:46 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTCT
TTATGTCCTCTACCATCATCATGAGATATGCTTTTAAATCCAGGTCTACC
TTTTCAGGTGTGTTAGGGTGTCCTGGATTGGGCGAAGTGGGCGTTCTGGG
TTCTGATGATGGTGAGTGGTCCTGGCTTCTGTTAGTAGGATTCTTACGTT
TACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTTGTTATAGTTGTCTTT
GTTAAAAGATTGTTCCTCTGTTGATTTTGTTACCCTCTATCAGCAGGCGT
GGGAGACAAGCTCTCTTCTCTGAGTTTCAGTGGTCAGAGCAGTCTCTGTA
GGCAAGCTCTCCTCTCTCAGGGAAGGTGTACAGTTATCTGGTGTTTGGAC
CTCCTCCTGGCTGAAGGTGAAGGCCCAAAACAGGATCTTTCCCAGAAGCT
GTGTTGCTTTGGCCAGGAAGGTGGCCAGTTGTCTGGAGTCGAAGATGTCG
CAGCCTCAGAAGCTCTGTGGCTCTTGCCGGGAAGGTGGCTGGTTGTCTGG
AGCTGAGGATGGTGCTGCCCCAGAATCTCTGCGACTCTCTCGCCCGTCCC
AGAAACGGCTGGCACTCTGTATTCCACACGGTCACCCGTGCAGCCTGCCC
TCCGCGGAGTCCCGGAGCCAAGAAGGCTCCCGCCGGTGCCTGTGCCACAA
ACCTCTCAGGCCAGGCAGACCCCCGTGCTCTCACCANGAAGGTGGCCGGC
TGTCTGGAGCTGAAAAG

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGGATACCTAGCACAGAAAACAATGTGGATATCAGC
TAGCACACTAACAATGAAAGAAAAACTTATAGGCTCTCAAGGAAGCTCAG
ACAACAAAGTCACCTGTCTCCAAACCCGACAACCTGATTTTAATTCCCAG
CATCTATGTGATGGAACAGAAGAATGAATTTCCACAACTTGTCTTCTGGT
CTCTTCAGCCCCCACACATATATGCTTACATATAAACAAGTAAATATGTA
ATAAATAACTTATTTTGTTTTTTTGTTTTTTAAGATAGAGTTTCACTGTG
TAGCCCTGGCCATCCTGAAATTTGCTCTATAGACCAGGCTTGCCTAAAAC
TTGTATAGATCTGCCTGCTTCTGCCTTCTGTGTTCTGGGATTTAAAAAAT
GTACCCATGAATGTGGAGGAAGGGAGTATGGGGGTTCAGGATGTGGTNGA
GGGAAGAGACAGGAGTGAAAGCCAGAGGGCCAGGAGAGTGAATAGAAATC
TACAGCTGCTAGGAGTGAGGGATTGGGGCATCTCTAGGAGAAGCCAGAGA
CCCAGAATAAAGAAAGACCTCCGATATCAATGTAAATGACCTTAGTAGAG
AATCATAGTAAAGGGGATATGGAACCTGAAGAGGCCATCTCCCCAGGATC
AGGCAGGATCCCCAATGGAGGTATAAAAACACCAACCCACTCATAAAACT
TTTTGAACAAAAATTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_e20.g1 MSMg01no534_e20.g1 CHROMAT_FILE:
MSMg01no534_e20.g1 PHD_FILE: MSMg01no534_e20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:46 2005
         (632 letters)



>mm_chr5_146694174_146695205
          Length = 1032

 Score = 1207 bits (624), Expect = 0.0
 Identities = 630/632 (99%), Gaps = 1/632 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggatacctagcacagaaaacaatgtggatatcagctagcacactaacaatgaaagaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggatacctagcacagaaaacaatgtggatatcagctagcacactaacaatgaaagaaaa 260

                                                                       
Query: 61  acttataggctctcaaggaagctcagacaacaaagtcacctgtctccaaacccgacaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttataggctctcaaggaagctcagacaacaaagtcacctgtctccaaacccgacaacc 320

                                                                       
Query: 121 tgattttaattcccagcatctatgtgatggaacagaagaatgaatttccacaacttgtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgattttaattcccagcatctatgtgatggaacagaagaatgaatttccacaacttgtct 380

                                                                       
Query: 181 tctggtctcttcagcccccacacatatatgcttacatataaacaagtaaatatgtaataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctggtctcttcagcccccacacatatatgcttacatataaacaagtaaatatgtaataa 440

                                                                       
Query: 241 ataacttattttgtttttttgttttttaagatagagtttcactgtgtagccctggccatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataacttattttgtttttttgttttttaagatagagtttcactgtgtagccctggccatc 500

                                                                       
Query: 301 ctgaaatttgctctatagaccaggcttgcctaaaacttgtatagatctgcctgcttctgc 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 ctgaaatttgctctatagaccaggcttgcctaaaacttgtagagatctgcctgcttctgc 560

                                                                       
Query: 361 cttctgtgttctgggatttaaaaaatgtacccatgaatgtggaggaagggagtatggggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttctgtgttctgggatttaaaaaatgtacccatgaatgtggaggaagggagtatggggg 620

                                                                       
Query: 421 ttcaggatgtggtngagggaagagacaggagtgaaagccagagggccaggagagtgaata 480
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcaggatgtggt-gagggaagagacaggagtgaaagccagagggccaggagagtgaata 679

                                                                       
Query: 481 gaaatctacagctgctaggagtgagggattggggcatctctaggagaagccagagaccca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaaatctacagctgctaggagtgagggattggggcatctctaggagaagccagagaccca 739

                                                                       
Query: 541 gaataaagaaagacctccgatatcaatgtaaatgaccttagtagagaatcatagtaaagg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gaataaagaaagacctccgatatcaatgtaaatgaccttagtagagaatcatagtaaagg 799

                                           
Query: 601 ggatatggaacctgaagaggccatctccccag 632
           ||||||||||||||||||||||||||||||||
Sbjct: 800 ggatatggaacctgaagaggccatctccccag 831


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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