BAC Information

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BAC

Clone NameMSMg01-534J09
Chromosome5 (Build37)
Map Location 64,016,546 - 64,191,482
singlet/doubletdoublet
Overlap gene3110047P20Rik, LOC100042133
Upstream geneCentd1
Downstream gene0610040J01Rik, AA536743, LOC100041636, LOC100041646, Pgm1, Tbc1d1, Ppia-ps22, LOC433894, LOC100042198
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534J09.T7 (MSMg01no534_j09.b1)MSMg01-534J09.TJ (MSMg01no534_j09.g1)
ACCAG602236AG602237
length755753
length of high quality
(start - end)		617 (41 - 657)569 (69 - 637)
definitionCHROMAT_FILE: MSMg01no534_j09.b1 PHD_FILE: MSMg01no534_j09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:09 2005CHROMAT_FILE: MSMg01no534_j09.g1 PHD_FILE: MSMg01no534_j09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,190,870 - 64,191,482)(64,016,546 - 64,017,114)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATCCCTGAGTTTTATCAGCTTCTCTTGAGCTTCTGGGTCACGGACGATTC
TTGGGTCTGTTCCAGTTATGTCCATGTATTTCCCCATCTCTGGGATTTTC
ACGAAGCGTTCGATGTTAGCAATCTTTCTGATGTAGCAAACACACTTCTT
CAGGAAGGCTGGAGTTTGCTTGCCTAGAGCAAAGTCAAACTCATCCTCGA
TAGCTGGAAGAAGACAAGACAGGGTTCATTGTCTTGAACGATGGAACCAT
GTGCCCAAATTCCCAATATGCAGCTCTTAGTTACTTTGAGGGACATTGAC
TTATAATTTGTAGAGATGCAACCTGTGGAGTCATTTCTTAAGTTAGCATT
AGGTTTTTCCTAAGCATGTAGAACCTAGAAGAATAGTTTTTTTTTTCGTA
AATAATTTTATTTCCTTCCCAATGGGAAGGAAAAGTCAAAGACCAGCTTG
ACAAGGCAAGCACGCTGGGTTCATGGTGATGAGTTCTAAGAGGTAAGTTT
AATTTCCCTCTCTAACTAGCTTCAGTCCTTTTACATGTGGAAGCATCTGG
ATCTCCGTGGGGCCAGGAAACATGGAGGTAGCTAGGTGACATAGCTAGGC
TCCTGGTTCCTTGCCAGGTCACCCTTTCCAATGCAGTGTCATCCTTTAGT
TTGAGGTGTATTGGTACCTATATCAATGGGCTNGAATAGAAATGAGAAAG
CACTG

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTTTTCATGTAGGAAGAAGATTTAATTATTG
TTCTACTTTAAGATAAGCTGCTGAAGAGGGACACCCCTCCCCCAAGGATC
AAGTGGAAGATAGTACCCAGAAATTACAAGATTACTGCTTGGAGATATGG
CATAATATAATTGCAAATAATAAAAATGTTCTGAGCTGCTTAGGCAAGTA
AAGGAAGGCTCATTAGATAGAAAATAAATGGTTTTTATGAAGCCAACAGA
CATCAGGAGGAAGCAACCTGTGACACTGGATTGACATTAATATCTGGGTC
TGACTGCTCCTGTTTCTTGTCTTATGTTAACGAAATCTAGATTATCCTCA
TAGTCTCACTGGTTGTTTAAGACTAGCTCTTTGTCTACTCCTTAACCCAC
TGAAACTTTCTGAGCAGACCAGCTTCCTCTGTTTCTCATGTCCATTTCGA
AGAAACATGACCAGTGAGGGCTCAGCTATTCAGTATCCCAAAGCAAAGAT
TTGACAACTCCACCTTTGAACTGATCAGTGGGGGACAGATAGTCTGAAAT
GCAAATAACCAGCCCTGTAATGACATTCTGCTATATTTGCACACAATCAC
CTAGCATAACTGTCCTCTGNAAGACTCCACTCATCAACTGACTGGAACAG
ATGCTGAGAACTCTGGTGCACTGCCNAACATTGGACTGAGTTTGGGGACT
CTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_j09.b1 MSMg01no534_j09.b1 CHROMAT_FILE:
MSMg01no534_j09.b1 PHD_FILE: MSMg01no534_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:09 2005
         (617 letters)



>mm_chr5_64190666_64191682
          Length = 1017

 Score = 1116 bits (577), Expect = 0.0
 Identities = 604/613 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatccctgagttttatcagcttctcttgagcttctgggtcacggacgattcttgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 gaattcatccctgagttttatcagcttctcttgagcttctgggtcacggacgattcttgg 758

                                                                       
Query: 65  gtctgttccagttatgtccatgtatttccccatctctgggattttcacgaagcgttcgat 124
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 gtctgttccggttatgtccatgtatttccccatctctgggattttcacgaagcgttcgat 698

                                                                       
Query: 125 gttagcaatctttctgatgtagcaaacacacttcttcaggaaggctggagtttgcttgcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gttagcaatctttctgatgtagcaaacacacttcttcaggaaggctggagtttgcttgcc 638

                                                                       
Query: 185 tagagcaaagtcaaactcatcctcgatagctggaagaagacaagacagggttcattgtct 244
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 637 tagagcaaagtcaaactcatcctcgatagctggaagaagacaaaacagggttcattgtct 578

                                                                       
Query: 245 tgaacgatggaaccatgtgcccaaattcccaatatgcagctcttagttactttgagggac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tgaacgatggaaccatgtgcccaaattcccaatatgcagctcttagttactttgagggac 518

                                                                       
Query: 305 attgacttataatttgtagagatgcaacctgtggagtcatttcttaagttagcattaggt 364
            ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 517 cttgacttataatttgtagagatgcagcctgtggagtcatttcttaagttagcattaggt 458

                                                                       
Query: 365 ttttcctaagcatgtagaacctagaagaatagttttttttttcgtaaataattttatttc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ttttcctaagcatgtagaacctagaagaatagttttttttttcgtaaataattttatttc 398

                                                                       
Query: 425 cttcccaatgggaaggaaaagtcaaagaccagcttgacaaggcaagcacgctgggttcat 484
           ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 397 cttcccaatgggaaggaaaagtcgaagaccagcttgataaggcaagcacgctgggttcat 338

                                                                       
Query: 485 ggtgatgagttctaagaggtaagtttaatttccctctctaactagcttcagtccttttac 544
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 337 ggtgatgagttctaagaggtaagtttagtttccctctctaactagcttcagtccttttac 278

                                                                       
Query: 545 atgtggaagcatctggatctccgtggggccaggaaacatggaggtagctaggtgacatag 604
           |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 277 atgtggaagcatctgggtctctgtggggccaggaaacatggaggtagctaggtgacatag 218

                        
Query: 605 ctaggctcctggt 617
           |||||||||||||
Sbjct: 217 ctaggctcctggt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no534_j09.g1 MSMg01no534_j09.g1 CHROMAT_FILE:
MSMg01no534_j09.g1 PHD_FILE: MSMg01no534_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:09 2005
         (569 letters)



>mm_chr5_64016346_64017314
          Length = 969

 Score = 1054 bits (545), Expect = 0.0
 Identities = 563/569 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttttcatgtaggaagaagatttaattattgttctactttaagataagctgctgaagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttttcatgtaggaagaagatttaattattgttctactttaagataagctgctgaagag 260

                                                                       
Query: 61  ggacacccctcccccaaggatcaagtggaagatagtacccagaaattacaagattactgc 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 ggacacccctcccccaaggatcaagtggaagataatacccagaaattacaagattactgc 320

                                                                       
Query: 121 ttggagatatggcataatataattgcaaataataaaaatgttctgagctgcttaggcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggagatatggcataatataattgcaaataataaaaatgttctgagctgcttaggcaag 380

                                                                       
Query: 181 taaaggaaggctcattagatagaaaataaatggtttttatgaagccaacagacatcagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaggaaggctcattagatagaaaataaatggtttttatgaagccaacagacatcagga 440

                                                                       
Query: 241 ggaagcaacctgtgacactggattgacattaatatctgggtctgactgctcctgtttctt 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 ggaagcaacctgtgacactggattgacattaatatctgagtctgactgctcctgtttctt 500

                                                                       
Query: 301 gtcttatgttaacgaaatctagattatcctcatagtctcactggttgtttaagactagct 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 gtcttatgttaacgaaatctagattatcctcatagtctcaccggttgtttaagactagct 560

                                                                       
Query: 361 ctttgtctactccttaacccactgaaactttctgagcagaccagcttcctctgtttctca 420
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 ctttgtctactccttaacccactgaaactttctgggcagaccagcttcctctgtttctca 620

                                                                       
Query: 421 tgtccatttcgaagaaacatgaccagtgagggctcagctattcagtatcccaaagcaaag 480
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtccatttggaagaaacatgaccagtgagggctcagctattcagtatcccaaagcaaag 680

                                                                       
Query: 481 atttgacaactccacctttgaactgatcagtgggggacagatagtctgaaatgcaaataa 540
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 681 atttgacaactccacctttgaactgatcagtggaggacagatagtctgaaatgcaaataa 740

                                        
Query: 541 ccagccctgtaatgacattctgctatatt 569
           |||||||||||||||||||||||||||||
Sbjct: 741 ccagccctgtaatgacattctgctatatt 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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