BAC Information

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BAC

Clone NameMSMg01-534O16
Chromosome5 (Build37)
Map Location 26,929,177 - 26,929,467
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837, 4930584F24Rik
Downstream geneDpp6, B930011P16Rik, Speer4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534O16.T7 (MSMg01no534_o16.b1)MSMg01-534O16.TJ (MSMg01no534_o16.g1)
ACCAG602490AG602491
length728761
length of high quality
(start - end)
---293 (65 - 357)
definitionCHROMAT_FILE: MSMg01no534_o16.b1 PHD_FILE: MSMg01no534_o16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:35 2005CHROMAT_FILE: MSMg01no534_o16.g1 PHD_FILE: MSMg01no534_o16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACACCGTTTTTACTTTTCCTCACCAGCCGGTGTCTTGTGCCCCGTTTTTG
TTCCCGGGCGGCTCGGTTTATTATTATGTGGTGCGTGTTTTTACTTTTTT
CCCCTCTTGTTCCCTTCTTATTTTTGCCTTTTGTTTTGTTTTNTTGTGGC
GTGTTCCCTCTAAAATTAAAAAATTTTGGGCGGGGGNNNNNNCCCGGCCT
AATACGGACTCACTATTTCCCGAAGNAAGGAATCCGNCGGGNAAATTTCT
TCAACCCTGTTAGGCAAATACCCCGGAAAAGGGGGGCACCAAAAAAAAAG
CCCCCCCCCCTTGGGAAAAAAAAAAAAAAANAAAAGGGGGTTTCCCAAAA
CAATTCCCCCCTTTTAAAATCCCTTCCCCAGGGGGGGAAAAAATGGGCGC
CAAATCCTTCCAAAAAAACCCCACCCCCCCCTCTCGGGGGGGAAGAAAAA
TTTTTTTCCCCCCCCTCCCCCTTTTTTTCCTCAAAAAATAATTTTCCGTG
GAGTGAGGCGTTGCTTCCCCTCCCCTTTTTCCTTCTCTTGCCCCAACTGG
TTTTGTCTTTATATCCCTAAATTTATATCCTCACGTCTCTTTTTTGGTGG
TCGGGGGGTGGGGTGGCGGGTTTGCTCCCCACCTTCCCCTCCTTTTTTCT
TTTTTTCTTTATGCCCTTTCCTCTTCTTTCCTCCTCACTATTTGTGCTGC
CGCACCCTTCCGCTTTACTTATTTTTCN
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXACTCCAAGGCGTTACTTAATCATCTAAAAGGTGTTG
TGTCAGATATAGAAGTGGGTCATAAATGACTGAAATCTTAAGAGAATCTG
AACACAGTGCTCCAACTCTTTACACTGGGAGGTTCTGGCCAATTAGCATG
CAGAGACTTCAATATAGGTGTGGCTCTCTTCTCTGGAACTTCAATTCACA
GAAGTAAAGAGCCAGATGATTGAACGTTAAATGTCCTTTTCATGGGGAAG
GGGTGGTAGGGGCTGCTTGGGTCAGAATGGTTCTTAGAGGAGATGAATGG
CAAAGGCCCCTCTGCNATTTGGTGGCTAGGCCTTCCTGGTTCTTGCTCCT
TTCTTTTACCCAGGGGCTTAAGCCCTTCTCTTCCCTTTAAGGGCCCCCCT
TAAGGGAAAAAAACCCCCCCAGGGGGGGGACCCCCCCCGCTNTNTTTTTT
TTNTNCTCCCTCTTTTGNTGTTGGGAGGGGNAGAAGAAAAAAAAAAANNT
ATAATACCTTNTCCCCTCTCTTCTCTTTTCTCTCCCCCCGTTCCAACTTC
CTCTTTTTTTTTTTTCCCTTCTATTCCACCCTCACTCTCCTAATTAAATC
ATCTGCCTCCCACCCTTATTTTAGGTTTTCTCTCTCACCTATTCTCCCAT
TTCTTATTTCCCACAGTACACAGGATTTATACACTCATCGATTTTAATTT
CCGCCCCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_o16.g1 MSMg01no534_o16.g1 CHROMAT_FILE:
MSMg01no534_o16.g1 PHD_FILE: MSMg01no534_o16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:35 2005
         (293 letters)



>mm_chr5_26928977_26929670
          Length = 694

 Score =  470 bits (243), Expect = e-137
 Identities = 280/297 (94%), Gaps = 10/297 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   actccaaggcgttacttaatcatctaaaaggtgttgtgtcagatatagaagtggg----t 56
           ||||||||||||||||||||||||||||||||||||||||||||||||||||       |
Sbjct: 201 actccaaggcgttacttaatcatctaaaaggtgttgtgtcagatatagaagt---cattt 257

                                                                       
Query: 57  cataaatgactgaaatcttaagagaatctgaacacagtgctccaactctttacactggga 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cataaatgactgaaatcttaagagaatctgaacacagtgctccaactctttacactggga 317

                                                                       
Query: 117 ggttctggccaattagcatgcagagacttcaatataggtgtggctctcttctctggaact 176
           ||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 318 ggttctggccaattagcctgcagagacttcaacataggtgtggctctcttctttggaact 377

                                                                       
Query: 177 tcaattcacagaagtaaagagccagatgattgaacgttaaatgtccttttcatggggaag 236
           |||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||
Sbjct: 378 tcaattcacagaagtaaagagccagatgattgaatgttaaatgtcctttttaaggggaag 437

                                                                    
Query: 237 gggtggtaggggctgcttgggtcagaatggttcttagaggagatgaatggcaaaggc 293
           |||||||||||||||||||||||||||||||||||||||   ||||||| |||||||
Sbjct: 438 gggtggtaggggctgcttgggtcagaatggttcttagag---atgaatgacaaaggc 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 694
Length adjustment: 9
Effective length of query: 284
Effective length of database: 685
Effective search space:   194540
Effective search space used:   194540
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)