Query= MSMg01no535_b23.b1 MSMg01no535_b23.b1 CHROMAT_FILE:
MSMg01no535_b23.b1 PHD_FILE: MSMg01no535_b23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:51 2005
(666 letters)
>mm_chr5_101026985_101028051
Length = 1067
Score = 1259 bits (651), Expect = 0.0
Identities = 662/667 (99%), Gaps = 5/667 (0%)
Strand = Plus / Plus
Query: 5 gaattcaa-tttccctgctctatctatcgcctttctcagtttctctttcaggattttact 63
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaatttccctgctctatctatcgcctttctcagtttctctttcaggattttact 264
Query: 64 atgccagataataggtacgttttcatttaaggtggtagaaaggagaaatgtcagtttgaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgccagataataggtacgttttcatttaaggtggtagaaaggagaaatgtcagtttgaa 324
Query: 124 gaaaaataatccaaactttaaagactgcatttggctctgaaatgcactctaggaagtaaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaaaataatccaaactttaaagactgcatttggctctgaaatgcactctaggaagtaaa 384
Query: 184 ttacccgtggaaatcatattctgtcctttgaaaaccaaatatttacctcgttaaggcatg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttacccgtggaaatcatattctgtcctttgaaaaccaaatatttacctcgttaaggcatg 444
Query: 244 gagagaaacaccaggtagggtttcatcatgacagcgtgctctctcttgtcacctctaaat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagagaaacaccaggtagggtttcatcatgacagcgtgctctctcttgtcacctctaaat 504
Query: 304 tctgtgggaagagctttgctttgtttggagagagttttgtaagttttctgatgttttatt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctgtgggaagagctttgctttgtttggagagagttttgtaagttttctgatgttttatt 564
Query: 364 tttttaaagcacaaactgtatccatatcttaatagccaaacagtccagttagtgctgtct 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttttaaagcacaaactgtatccatatcttaatagccaaacagtccagttagtgctgtct 624
Query: 424 ttatcagggaaagagagctatcctggaggcagggcctcagttaggatgggactcaaagcc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttatcagggaaagagagctatcctggaggcagggcctcagttaggatgggactcaaagcc 684
Query: 484 ataggtgggtttgtgtgactagggagcacgacagccatgggacctaaggacgatgatgtc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ataggtgggtttgtgtgactagggagcacgacagccatgggacctaaggacgatgatgtc 744
Query: 544 accatcatttgttgttgttgtaaccctgcctgcctgactgtctgtctctctaactaccta 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 accatcatttgttgttgttgtaaccctgcctgcctgactgtctgtctctctaactaccta 804
Query: 604 taatctatctatctatctatctatctatctatctatctatctatctatctatc-atc--- 659
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 805 taatctatctatctatctatctatctatctatctatctatctatctatctatctatcatt 864
Query: 660 tatctct 666
|||||||
Sbjct: 865 tatctct 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1067
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1057
Effective search space: 693392
Effective search space used: 693392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_b23.g1 MSMg01no535_b23.g1 CHROMAT_FILE:
MSMg01no535_b23.g1 PHD_FILE: MSMg01no535_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:51 2005
(457 letters)
>mm_chr5_101213372_101214228
Length = 857
Score = 793 bits (410), Expect = 0.0
Identities = 446/458 (97%), Gaps = 2/458 (0%)
Strand = Plus / Minus
Query: 1 agctctgctgtgtctaccaggagagtgtctgctgatagttttctcttctctgtacctgtt 60
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 521 agctctgctgtgtccaccaggagagtgtctgctgatagttttctcttctctgcacctgtt 462
Query: 61 tgttgactgggttttttaacttctacacccgtttggcccttactgaggctttcagtagtc 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 461 tgttgactgggttttttaacttttacacccgtttggcccttactgaggctttcagtagtc 402
Query: 121 atagactaccaacgggaatttttaatcagg-tcattctccaccctccctcccaatcctac 179
|||||||||| | ||||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct: 401 atagactaccgatgggaatttttaataaggct-attctccaccctccctcccaatcctac 343
Query: 180 tggcatagactggtctaaattaggattaaatttactggctggtagaatgataaaaatgtt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tggcatagactggtctaaattaggattaaatttactggctggtagaatgataaaaatgtt 283
Query: 240 tagggaaccgtcaaggagttgaatttcaatgattgatagtctgcctttacaatgatggtt 299
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 282 tagggaaccgtcaaggagttgaatttcaatgattgatagtctgccttcacaatgatggtt 223
Query: 300 ttgattatttgagaaacaaaacagccaggcctgatagctcatgcctttaatccctgcact 359
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 222 ttgattatttgagaaacaaaacagccaggcctgagagctcatgcctttaatacctgcact 163
Query: 360 tggaagggagaggcaggaggatctttgtgagtttgaggccagcctggtccacatctgagt 419
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 162 tggaagggagaggcaggaggatctctgtgagtttgaggccagcctggtccacatctgagt 103
Query: 420 tccaggacagccaggcctacataatgagacactggctc 457
||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tccaggacagccaggcctacataatgagacactggctc 65
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space: 378609
Effective search space used: 378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
