NNNAACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTCATCATTATGCCACCTCTCTAACCTCCTTAGTCTATAC
TATTTAGAGAATAATGCAAAGAAAAAATAGCATAGATATGTGGTATGGTG
CATCTTTGTCTGATGTTTGTTTTGGCTGAATCTATATGTGGGGCCGAGTG
CATCAGTGGGCTTTCAATTTCTTTGTAATAGCAAATACTTCGGCCTAAAC
ATCCCCAGGCCATCTATCTTGCTAAATGGAACCAACAGGAGTTGGCTTGA
TGGATGAAAGCTGAGAAGTAGGTCAACCTCTCCAATAAGGACCGAAGCTT
CAGAACACGGAGCTGCTCAGGATGAATCTGAGTTCTGGTGCGGCTCTGCT
GTGGGTGTGGGTTTGGACTGCGGAGCTCGAGCCTCTGCTGTCCGACAGGC
AGCTTGCCTGATATTAACCATCAGGTGGGAAAAGCAATTACATTTGCACA
AGCTGGAGATCCGCTCGTCCCATTCTCCCTCCCCGCAGGCTATGTCAAAA
CATGAGGGCAGGATCCTGCTTCTTCTCACGTTTTAAAAACATACAGTGGA
CTTATGTTTACAGTACCTCGAAGGGAGGTGACGCGGAACAGCAGAGCGCG
CCACCCCTGCAAAGAGCCACCCTGTGCTGCCCGCAGCTCTCTCCATAGCA
GACCACAACATGGTCGCTGGGCGCCAACTCAGAGGGCGAGTCTCGCCAGG
GATGN

GGGACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGAGCACATATATACTCAAAC
TTATGGGACACAATGAAAGCAGCACTAAGGAAAGTTCATAGCACTAAGTG
CCTTCACAAGGAAATTAGTGAAATCTCACACAAGGAATTTAACAGCACAC
CTGAAAACATAACAAAAAGAAGCACACACCCAAGAGAAGTAGACAGCATA
AGATAATCAAATAAAGGCTGAGATCAATAAGAACAGTACAAAGAATCAGC
AAAACCAAGAGCTGATTCTCTGAGAAAAATCAATGAAATAGACAAACCTT
TAGTCAAACTAACTGAAAAGAAAACAGAGAAAGAATATCCAAATTATCAA
AATCAGAAATGAAGAGAGGGATACAACAACAGACAACAAGGATGTCCAAA
GAAGGATTGGGTCTTCAAAAAATCTAAATTCCATGAAGTTGGAAACTCTC
AATGAAATGGATGATTTTCTTGCTAGATACCATTTGCCAAAGCTGAATCA
AGATAAGGTAAACTATGTAAAGAGACTTAAAAACCCTATGGAAGTAGAAA
TAGTCATTACAAGTTTTCCACCACCACCACCACCCCATGCAAAAAAAAAA
TAACAATAAGCCTGGGCCAGATGCTTCCAGTTCAAAAATGTGCCAGACGG
TCAAAGAAGATATAATACCAATAGTCCTCAAATTATTCCACAACGTAGAA
GCAGAAGTGACACTACCAAN

Query= MSMg01no535_f21.b1 MSMg01no535_f21.b1 CHROMAT_FILE:
MSMg01no535_f21.b1 PHD_FILE: MSMg01no535_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:10 2005
         (699 letters)



>mm_chr5_41947834_41948932
          Length = 1099

 Score = 1266 bits (655), Expect = 0.0
 Identities = 685/695 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcatcattatgccacctctctaacctccttagtctatactatttagagaataa 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 gaattcttcatcattaagccacctctctaacctccttagtctatactatttagagaataa 840

                                                                       
Query: 65  tgcaaagaaaaaatagcatagatatgtggtatggtgcatctttgtctgatgtttgttttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 tgcaaagaaaaaatagcatagatatgtggtatggtgcatctttgtctgatgtttgttttg 780

                                                                       
Query: 125 gctgaatctatatgtggggccgagtgcatcagtgggctttcaatttctttgtaatagcaa 184
           | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 779 gttgaatctatatgtggggctgagtgcatcagtgggctttcaatttctttgtaatagcaa 720

                                                                       
Query: 185 atacttcggcctaaacatccccaggccatctatcttgctaaatggaaccaacaggagttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 atacttcggcctaaacatccccaggccatctatcttgctaaatggaaccaacaggagttg 660

                                                                       
Query: 245 gcttgatggatgaaagctgagaagtaggtcaacctctccaataaggaccgaagcttcaga 304
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 659 gcttgatggatgaaagctgagaagtaggtcaacctctccaatgaggaccgaagcttcaga 600

                                                                       
Query: 305 acacggagctgctcaggatgaatctgagttctggtgcggctctgctgtgggtgtgggttt 364
           ||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||
Sbjct: 599 acacggagctgctcaggatgaatctgagtcctggtgcggatctgctgtgggtgtaggttt 540

                                                                       
Query: 365 ggactgcggagctcgagcctctgctgtccgacaggcagcttgcctgatattaaccatcag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ggactgcggagctcgagcctctgctgtccgacaggcagcttgcctgatattaaccatcag 480

                                                                       
Query: 425 gtgggaaaagcaattacatttgcacaagctggagatccgctcgtcccattctccctcccc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gtgggaaaagcaattacatttgcacaagctggagatccgctcgtcccattctccctcccc 420

                                                                       
Query: 485 gcaggctatgtcaaaacatgagggcaggatcctgcttcttctcacgttttaaaaacatac 544
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gcaggctatgtcaaaacacgagggcaggatcctgcttcttctcacgttttaaaaacatac 360

                                                                       
Query: 545 agtggacttatgtttacagtacctcgaagggaggtgacgcggaacagcagagcgcgccac 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 agtggacttatgtttacagtacctcgaagggaggtgacgcggaacagcagagcgcgccac 300

                                                                       
Query: 605 ccctgcaaagagccaccctgtgctgcccgcagctctctccatagcagaccacaacatggt 664
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 299 ccctgcaaagagccaccctgtgctgcccgcggctctctccatagcagaccacaacacggt 240

                                              
Query: 665 cgctgggcgccaactcagagggcgagtctcgccag 699
           |||||||||||||||||||||||||||||||||||
Sbjct: 239 cgctgggcgccaactcagagggcgagtctcgccag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1099
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1089
Effective search space:   750321
Effective search space used:   750321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)