NAAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGGTAGCTTTCCCGCACTGTCTTGGCTTAGGAGTGTTTGATG
AACACAAAAGGAAGAAAAGTAAGCATTTCAGATGTATCATGAGTCCATCA
TTGTCTGGATTTTAACACTGGGTGTATTTCTTCTCCAGAGTTTTGTCTGA
TCCTTATATAAGATCCACACATATAAAATAGCAGGTAACAATAAATATTT
TTATATTATATATTTTATATAATTTCATGGTATTTTATACCATCTTATAC
ACATGAAAACATTTAAGCAAAAACCCTACAATGATCTTATCTATTTTATA
ACATGTTAAAATTGTATTCTTTACTTATTATAAAAGAAATATATGGGTTA
AATTTTAGAGCTAAAAATACCATTTTTATACCTCTTTCTGTTACTCCTGC
TTAATATGGTATAACTGTACTTATTTAGACAGTTAGATACATGTTCTGGA
AAAGCCTGGCCCTTTAGATTCAACATTAGTAGAACTATAAGAAGTAATCA
AAGTTAGAAATTTGAAAAATCTTCTGTAAGTGTGAAGTTACTGTAAGTGC
TATTTGCTTTTGGTGTAATATGGCCTGTGAATGTGACAAGGATGTAAGAC
ACTGTCGGGTCTAACTTCCTTTTACTTTTTTGCAATAATCTGTTTCACCA
ATGAAATAGCATTCAGAAGATTGCTGTATCCTAAATAAATTCTACAACAC
AGA

NNAACCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCT
GAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCGTGAGATTCCACCTCATACCAGCCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGCTAGTGGGATTGCAAGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CCGCAATACCTCTCCTGGGCATATATCCATAAGATGTTCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTGTAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATAGATACAGAAAA
TGTGGTACATTTACATAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGTCATCATCCTGAA
TGAGGTAACCCAATCACAAAAGAACTCACATGATATATACTCACTGATAA
GTGGATATTAGCCCAGAAACATAGAATACCCCAGATACAAGATAAAATTT
GCAAAACCTATGAAACCCAGCTCTTTCTTTAGATGAATGGAAATCACTTG
CCAAATGAAN

Query= MSMg01no535_g19.b1 MSMg01no535_g19.b1 CHROMAT_FILE:
MSMg01no535_g19.b1 PHD_FILE: MSMg01no535_g19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:14 2005
         (705 letters)



>mm_chr5_21476381_21477485
          Length = 1105

 Score = 1317 bits (681), Expect = 0.0
 Identities = 696/701 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctggtagctttcccgcactgtcttggcttaggagtgtttgatgaacacaaaagga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggtagctttcccgcactgtcttggcttaggagtgtttgatgaacacaaaagga 264

                                                                       
Query: 65  agaaaagtaagcatttcagatgtatcatgagtccatcattgtctggattttaacactggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaaaagtaagcatttcagatgtatcatgagtccatcattgtctggattttaacactggg 324

                                                                       
Query: 125 tgtatttcttctccagagttttgtctgatccttatataagatccacacatataaaatagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtatttcttctccagagttttgtctgatccttatataagatccacacatataaaatagc 384

                                                                       
Query: 185 aggtaacaataaatatttttatattatatattttatataatttcatggtattttatacca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggtaacaataaatatttttatattatatattttatataatttcatggtattttatacca 444

                                                                       
Query: 245 tcttatacacatgaaaacatttaagcaaaaaccctacaatgatcttatctattttataac 304
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctcatacacatgaaaacatttaagcaaaaaccctacaatgatcttatctattttataac 504

                                                                       
Query: 305 atgttaaaattgtattctttacttattataaaagaaatatatgggttaaattttagagct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgttaaaattgtattctttacttattataaaagaaatatatgggttaaattttagagct 564

                                                                       
Query: 365 aaaaataccatttttatacctctttctgttactcctgcttaatatggtataactgtactt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaaaataccatttttatacctctttctgttactcctgcttaatatggtataactgtactt 624

                                                                       
Query: 425 atttagacagttagatacatgttctggaaaagcctggccctttagattcaacattagtag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atttagacagttagatacatgttctggaaaagcctggccctttagattcaacattagtag 684

                                                                       
Query: 485 aactataagaagtaatcaaagttagaaatttgaaaaatcttctgtaagtgtgaagttact 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aactataagaagtaatcaaagttagaaatttgaaaaatcttctgtaagtgtgaagttact 744

                                                                       
Query: 545 gtaagtgctatttgcttttggtgtaatatggcctgtgaatgtgacaaggatgtaagacac 604
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 745 gtaagtgctatttgcttttggtgtagtatggcctgtgaatgtgacaaggatgtaagacac 804

                                                                       
Query: 605 tgtcgggtctaacttccttttacttttttgcaataatctgtttcaccaatgaaatagcat 664
           |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 805 tgtcaggtctaacttccttttactttttcgcaataatctgtttcaccaatgaaatagcat 864

                                                    
Query: 665 tcagaagattgctgtatcctaaataaattctacaacacaga 705
           |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 865 tcagaagaatgctgtatcctaaataaattctacaacacaga 905


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1105
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1095
Effective search space:   761025
Effective search space used:   761025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)