BAC Information

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BAC

Clone NameMSMg01-535H22
Chromosome5 (Build37)
Map Location 144,026,884 - 144,027,329
singlet/doubletsinglet
Overlap geneZfp316
Upstream geneD930005D10Rik, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12
Downstream geneGm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535H22.T7 (MSMg01no535_h22.b1)MSMg01-535H22.TJ (MSMg01no535_h22.g1)
ACCAG602930AG602931
length796791
length of high quality
(start - end)
---456 (144 - 599)
definitionCHROMAT_FILE: MSMg01no535_h22.b1 PHD_FILE: MSMg01no535_h22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:20 2005CHROMAT_FILE: MSMg01no535_h22.g1 PHD_FILE: MSMg01no535_h22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTCGGTGTGTATTAATTACCATTCTTTATTTTGGGTGTG
ATGATTGTGCTCAACTCCTAACAGATGCTTGGGAGACATTTTTCTGAATG
AATGATCACCCCTGTTCCTTAGAGGTTCTCTCACTGAAGAACTGGTGCTC
ACCTGTATGGTCAAGCTGGTTAGCCAGCCAACCCTACGGAGCCAACTGAC
TCCAGTTCCCCACCACTAGGATTACACACGAATACACAGGTTGGTGCCTT
TCTCAACAGTGCTGTATTATACAAAATACAGGTCTCACGTTTTCTTATGC
TCCTGTCTACGACCTCTTCTATTCCAATAACTTCTGTCAGTTTATGAAGG
ACTTGTTTGGATGCTCACTATGCTGCGATATATTATCTAGTTTATTGAAG
CTGAGTGCGGTGACTCCAGCATTTGTTAGGACAAGGCTCCTGGAAATTCA
AGGTTATCCCCAACTACGGAGTCATATGAGGACAGTCCAGGCTCATTAGA
CTCTGTCTTTTTATACGCACTTACTCACTCTGACACGCACAACACAGATA
TAGAGAGACTGAGACTGTATAGCCAGACTTCCATCCACTTAAGAGATTAG
AGACTAATCACTAGCTGGTGGACACTGGAGACGGCAGAAGCACACAGTTG
CTGGAAAGATGGAATGTGGATCTCTATGAGTTGATNGTCAGCTGATAAGT
TGCCCGCCAGAGCTGCATGAGAGTTCCTGTCTCATAAAACAAAAAA
TTGTTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGATTACCCCCGGTGCTGGT
GAAATGGCTCGACAGATAATGGCACCTGACTGTCAAGCTTCGTGACCTGA
GTCTGACCCCTGAGACCTGTGTGGTAGGGGAGAACTGATTCCTGGGAGTT
GTAGTTCAATCTCCACGATTGGCATGGCATGCATCACTACTCCACAAATT
AAACACCAACCACAAAAACATAAAAAAACAAATAGAGCTGCCTCACCCTG
GAGTGCCACTGGGCTGTTGGTTGTTTTTTTGTTTGTTTGTTTGTTTTTTG
TTTTGTTTTGTTTTGTTTTTTGTAGACAAGGAACACTTTAGTGGCTGTAG
GACCTCTGCTCCTATCTCATTAAGCCGGTGGCTTTAGGCTCCAGGCCAGG
TGCAGCTAGACTGAGTCTGTGGTATCAGTGGGGAAGCAGGACCCTGTAGG
CCCCTGAGGTGTTGACATTCATCCATGTTTATTCTCTGATCCTCCAGCGG
GAAGGAGTGTCATATCACGTGTCACCATTGCTGGTCTGGTGATGAGCCAG
ACTCCATCTTTCTGACTGGGAAGGAGTAATGCATGCTCATGGCCCTCTCT
GTCTTGCCCTTGTCTTACAAAAGGGGTTCTGAGAGCTTGTTCCCTCCTAG
AGACGAAAACAAGAGCCTTCCCACACCCCCAAGCCGCATTAGTCCTTGTA
GTCGACGGTCCTTCGGTCCGGCCTGTTCCATGTGCACACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_h22.g1 MSMg01no535_h22.g1 CHROMAT_FILE:
MSMg01no535_h22.g1 PHD_FILE: MSMg01no535_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:20 2005
         (456 letters)



>mm_chr5_144026474_144027329
          Length = 856

 Score =  824 bits (426), Expect = 0.0
 Identities = 441/446 (98%)
 Strand = Plus / Minus

                                                                       
Query: 11  tgacccctgagacctgtgtggtaggggagaactgattcctgggagttgtagttcaatctc 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 tgacccctgagacctgtgtggtaggggagaactgattcctgggagttgtagttcaatctc 797

                                                                       
Query: 71  cacgattggcatggcatgcatcactactccacaaattaaacaccaaccacaaaaacataa 130
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 cacgtttggcatggcatgcatcactactccacaaattaaacaccaaccacaaaaacataa 737

                                                                       
Query: 131 aaaaacaaatagagctgcctcaccctggagtgccactgggctgttggttgtttttttgtt 190
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 aaaaacaaatacagctgcctcaccctggagtgccactgggctgttggttgtttttttgtt 677

                                                                       
Query: 191 tgtttgtttgttttttgttttgttttgttttgttttttgtagacaaggaacactttagtg 250
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tgtttgtttgtttgttgttttgttttgttttgttttttgtagacaaggaacactttagtg 617

                                                                       
Query: 251 gctgtaggacctctgctcctatctcattaagccggtggctttaggctccaggccaggtgc 310
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gctgtaggacctccgctcctatctcattaagccggtggctttaggctccaggccaggtgc 557

                                                                       
Query: 311 agctagactgagtctgtggtatcagtggggaagcaggaccctgtaggcccctgaggtgtt 370
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 556 agctagactgagtctgtggtatcagtggggaagcaggaccctgtaggctcctgaggtgtt 497

                                                                       
Query: 371 gacattcatccatgtttattctctgatcctccagcgggaaggagtgtcatatcacgtgtc 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gacattcatccatgtttattctctgatcctccagcgggaaggagtgtcatatcacgtgtc 437

                                     
Query: 431 accattgctggtctggtgatgagcca 456
           ||||||||||||||||||||||||||
Sbjct: 436 accattgctggtctggtgatgagcca 411


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)